Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LA349_RS21800 Genome accession   NZ_CP083633
Coordinates   4572697..4573293 (+) Length   198 a.a.
NCBI ID   WP_044521939.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain FDAARGOS_1503     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4567697..4578293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA349_RS21775 (LA349_21775) - 4567874..4569631 (-) 1758 WP_044521938.1 Lon protease family protein -
  LA349_RS21780 (LA349_21780) matP 4569817..4570269 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LA349_RS21785 (LA349_21785) ompA 4570416..4571486 (-) 1071 WP_044521956.1 porin OmpA -
  LA349_RS21790 (LA349_21790) sulA 4571839..4572348 (-) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  LA349_RS21795 (LA349_21795) - 4572374..4572679 (+) 306 WP_158239089.1 hypothetical protein -
  LA349_RS21800 (LA349_21800) sxy/tfoX 4572697..4573293 (+) 597 WP_044521939.1 TfoX/Sxy family DNA transformation protein Regulator
  LA349_RS21805 (LA349_21805) yccS 4573304..4575439 (-) 2136 WP_044521942.1 YccS family putative transporter -
  LA349_RS21810 (LA349_21810) - 4575457..4575903 (-) 447 WP_004201437.1 YccF domain-containing protein -
  LA349_RS21815 (LA349_21815) helD 4576028..4578082 (+) 2055 WP_044521945.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22742.41 Da        Isoelectric Point: 10.0723

>NTDB_id=606960 LA349_RS21800 WP_044521939.1 4572697..4573293(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain FDAARGOS_1503]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEENIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=606960 LA349_RS21800 WP_044521939.1 4572697..4573293(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain FDAARGOS_1503]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCTCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGAGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATTCCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCTCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.239

99.495

0.49