Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NMD51_RS22745 Genome accession   NZ_CP100918
Coordinates   4710254..4711246 (-) Length   330 a.a.
NCBI ID   WP_370603123.1    Uniprot ID   -
Organism   Escherichia coli strain ET745     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4705254..4716246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD51_RS22735 (NMD51_22575) yieP 4708146..4708838 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  NMD51_RS22740 (NMD51_22580) mdtD 4708861..4710288 (+) 1428 WP_001280858.1 multidrug transporter subunit MdtD -
  NMD51_RS22745 (NMD51_22585) cytR 4710254..4711246 (-) 993 WP_370603123.1 ribose operon transcriptional repressor RbsR Regulator
  NMD51_RS22750 (NMD51_22590) rbsK 4711250..4712179 (-) 930 WP_001300603.1 ribokinase -
  NMD51_RS22755 (NMD51_22595) rbsB 4712305..4713195 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NMD51_RS22760 (NMD51_22600) rbsC 4713220..4714185 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  NMD51_RS22765 (NMD51_22605) rbsA 4714190..4715695 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  NMD51_RS22770 (NMD51_22610) rbsD 4715703..4716122 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36539.84 Da        Isoelectric Point: 5.3981

>NTDB_id=606922 NMD51_RS22745 WP_370603123.1 4710254..4711246(-) (cytR) [Escherichia coli strain ET745]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKGLNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=606922 NMD51_RS22745 WP_370603123.1 4710254..4711246(-) (cytR) [Escherichia coli strain ET745]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGGACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361