Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LA332_RS11600 Genome accession   NZ_CP083630
Coordinates   2380713..2381339 (-) Length   208 a.a.
NCBI ID   WP_032617404.1    Uniprot ID   A0A4U9HRJ8
Organism   Leclercia adecarboxylata strain FDAARGOS_1505     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2375713..2386339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA332_RS11585 (LA332_11585) helD 2375950..2378004 (-) 2055 WP_032617408.1 DNA helicase IV -
  LA332_RS11590 (LA332_11590) - 2378128..2378574 (+) 447 WP_032617407.1 YccF domain-containing protein -
  LA332_RS11595 (LA332_11595) yccS 2378593..2380728 (+) 2136 WP_032617405.1 YccS family putative transporter -
  LA332_RS11600 (LA332_11600) sxy/tfoX 2380713..2381339 (-) 627 WP_032617404.1 TfoX/Sxy family DNA transformation protein Regulator
  LA332_RS11605 (LA332_11605) sulA 2381557..2382066 (+) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  LA332_RS11610 (LA332_11610) ompA 2382421..2383473 (+) 1053 WP_112300445.1 porin OmpA -
  LA332_RS11615 (LA332_11615) matP 2383540..2383995 (-) 456 WP_032617400.1 macrodomain Ter protein MatP -
  LA332_RS11620 (LA332_11620) - 2384182..2385942 (+) 1761 WP_032617399.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23820.39 Da        Isoelectric Point: 9.3562

>NTDB_id=606898 LA332_RS11600 WP_032617404.1 2380713..2381339(-) (sxy/tfoX) [Leclercia adecarboxylata strain FDAARGOS_1505]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRAVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPALRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=606898 LA332_RS11600 WP_032617404.1 2380713..2381339(-) (sxy/tfoX) [Leclercia adecarboxylata strain FDAARGOS_1505]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTTGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCAGACGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGCGCACCGTATTGCGCCAAAAATACCACCTCTTATCTGACGCTGATGAAGCGGGGGCGCGCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCGTCACTTGCTCTCGAAGCCGCGCG
GCGGGAGCGCCGTGAGCGGTACAAACGCGACAGGTTGAAAGATTTACCCAATCTCAACTTTCAGCTTGAGATTTTGCTGA
ATGAGGCGGGCATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTGAAGATCAGAGCGCTTAAC
AAGCATCTGAGTTACAAAGTGCTGTTTGCGCTGGAGGGGGCGATAGTGGGGCTGCATGAAGCAGCGCTCCCGGCGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTACCGGTAGAGAACAGTCCTCACTCAGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9HRJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.561

98.558

0.567