Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMD51_RS17255 Genome accession   NZ_CP100918
Coordinates   3561641..3562246 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ET745     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3556641..3567246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD51_RS17235 (NMD51_17115) aes 3556678..3557637 (+) 960 WP_000801850.1 acetyl esterase -
  NMD51_RS17240 (NMD51_17120) hemH 3557634..3558596 (-) 963 WP_001250088.1 ferrochelatase -
  NMD51_RS17245 (NMD51_17125) adk 3558832..3559476 (-) 645 WP_001220233.1 adenylate kinase -
  NMD51_RS17250 (NMD51_17130) htpG 3559657..3561531 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NMD51_RS17255 (NMD51_17135) recR 3561641..3562246 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NMD51_RS17260 (NMD51_17140) ybaB 3562246..3562575 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NMD51_RS17265 (NMD51_17145) dnaX 3562628..3564559 (-) 1932 WP_370603071.1 DNA polymerase III subunit gamma/tau -
  NMD51_RS17270 (NMD51_17150) apt 3564688..3565239 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NMD51_RS17275 (NMD51_17155) ybaN 3565392..3565769 (-) 378 WP_001188905.1 DUF454 family protein -
  NMD51_RS17280 (NMD51_17160) priC 3565839..3566366 (+) 528 WP_040061974.1 primosomal replication protein N'' -
  NMD51_RS17285 (NMD51_17165) rsmS 3566380..3566541 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=606897 NMD51_RS17255 WP_001195025.1 3561641..3562246(-) (recR) [Escherichia coli strain ET745]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=606897 NMD51_RS17255 WP_001195025.1 3561641..3562246(-) (recR) [Escherichia coli strain ET745]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443