Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD51_RS08845 Genome accession   NZ_CP100918
Coordinates   1856314..1857741 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain ET745     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1851314..1862741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD51_RS08815 (NMD51_08750) yeeZ 1851369..1852193 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  NMD51_RS08820 (NMD51_08755) yeeY 1852239..1853168 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NMD51_RS08825 (NMD51_08760) yoeI 1853383..1853445 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD51_RS08830 (NMD51_08765) plaP 1853435..1854793 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD51_RS08835 (NMD51_08770) tsuA 1854972..1856030 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD51_RS08840 (NMD51_08775) tsuB 1856044..1856271 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD51_RS08845 (NMD51_08780) sbcB 1856314..1857741 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  NMD51_RS08850 (NMD51_08785) dacD 1857950..1859116 (+) 1167 WP_001464461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD51_RS08855 (NMD51_08790) sbmC 1859235..1859707 (+) 473 Protein_1731 DNA gyrase inhibitor SbmC -
  NMD51_RS08860 (NMD51_08795) yeeA 1859905..1860963 (+) 1059 WP_001200895.1 FUSC family protein -
  NMD51_RS08865 (NMD51_08800) tmaR 1861135..1861464 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD51_RS08870 (NMD51_08805) - 1861565..1861930 (-) 366 WP_224446746.1 EutP/PduV family microcompartment system protein -
  NMD51_RS08875 (NMD51_08810) - 1861980..1862677 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=606878 NMD51_RS08845 WP_000980608.1 1856314..1857741(-) (sbcB) [Escherichia coli strain ET745]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=606878 NMD51_RS08845 WP_000980608.1 1856314..1857741(-) (sbcB) [Escherichia coli strain ET745]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581