Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   LA346_RS07640 Genome accession   NZ_CP083627
Coordinates   1457433..1457699 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   A0A654WS02
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1456861..1457310 1457433..1457699 flank 123


Gene organization within MGE regions


Location: 1456861..1457699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS07635 (LA346_07635) - 1456861..1457307 (+) 447 Protein_1478 IS30 family transposase -
  LA346_RS07640 (LA346_07640) HI0659 1457433..1457699 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=606852 LA346_RS07640 WP_001814186.1 1457433..1457699(+) (HI0659) [Streptococcus pneumoniae strain FDAARGOS_1508]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=606852 LA346_RS07640 WP_001814186.1 1457433..1457699(+) (HI0659) [Streptococcus pneumoniae strain FDAARGOS_1508]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654WS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489