Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LA346_RS02890 Genome accession   NZ_CP083627
Coordinates   541073..541783 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 536073..546783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS02875 (LA346_02875) - 536728..536976 (-) 249 WP_000364990.1 YneF family protein -
  LA346_RS02880 (LA346_02880) treC 537118..538743 (-) 1626 WP_000171211.1 alpha,alpha-phosphotrehalase -
  LA346_RS02885 (LA346_02885) treP 538921..540888 (-) 1968 WP_000514304.1 PTS system trehalose-specific EIIBC component -
  LA346_RS02890 (LA346_02890) treR 541073..541783 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  LA346_RS02895 (LA346_02895) - 541816..542619 (-) 804 WP_000157672.1 ABC transporter ATP-binding protein -
  LA346_RS02900 (LA346_02900) - 542632..543509 (-) 878 Protein_582 ABC transporter permease -
  LA346_RS02905 (LA346_02905) - 543521..544330 (-) 810 Protein_583 ABC transporter substrate-binding protein -
  LA346_RS02910 (LA346_02910) amiF 544949..545875 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=606799 LA346_RS02890 WP_000760673.1 541073..541783(+) (treR) [Streptococcus pneumoniae strain FDAARGOS_1508]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=606799 LA346_RS02890 WP_000760673.1 541073..541783(+) (treR) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593