Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LA341_RS15785 Genome accession   NZ_CP083626
Coordinates   3415037..3416476 (+) Length   479 a.a.
NCBI ID   WP_042025042.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain FDAARGOS_1509     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410037..3421476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA341_RS15755 (LA341_15755) mlaF 3410614..3411414 (-) 801 WP_026456358.1 phospholipid ABC transporter ATP-binding protein MlaF -
  LA341_RS15760 (LA341_15760) - 3411622..3412617 (+) 996 WP_042025040.1 KpsF/GutQ family sugar-phosphate isomerase -
  LA341_RS15765 (LA341_15765) kdsC 3412617..3413171 (+) 555 WP_026456114.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LA341_RS15770 (LA341_15770) lptC 3413168..3413728 (+) 561 WP_026456113.1 LPS export ABC transporter periplasmic protein LptC -
  LA341_RS15775 (LA341_15775) lptA 3413715..3414242 (+) 528 WP_026456112.1 lipopolysaccharide transport periplasmic protein LptA -
  LA341_RS15780 (LA341_15780) lptB 3414246..3414971 (+) 726 WP_026456111.1 LPS export ABC transporter ATP-binding protein -
  LA341_RS15785 (LA341_15785) rpoN/rpoN1 3415037..3416476 (+) 1440 WP_042025042.1 RNA polymerase factor sigma-54 Machinery gene
  LA341_RS15790 (LA341_15790) hpf 3416498..3416785 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  LA341_RS15795 (LA341_15795) ptsN 3416788..3417234 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LA341_RS15800 (LA341_15800) rapZ 3417280..3418146 (+) 867 WP_042025043.1 RNase adapter RapZ -
  LA341_RS15805 (LA341_15805) npr 3418167..3418439 (+) 273 WP_026456107.1 PTS phosphocarrier protein NPr -
  LA341_RS15810 (LA341_15810) degS 3418557..3419660 (-) 1104 WP_042025044.1 outer membrane-stress sensor serine endopeptidase DegS -
  LA341_RS15815 (LA341_15815) - 3419751..3421112 (-) 1362 WP_042025045.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54050.86 Da        Isoelectric Point: 4.3230

>NTDB_id=606779 LA341_RS15785 WP_042025042.1 3415037..3416476(+) (rpoN/rpoN1) [Aeromonas enteropelogenes strain FDAARGOS_1509]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALENNPLLEQEESEVQETSPQDQVDASQLDSSDAMAQDQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGDDTVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQTAVSSDEVEVELDEIEVVLKRVQHFDPVGIAARSVQECLLIQLEQYDPETPWISEAKEVIQEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSSPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=606779 LA341_RS15785 WP_042025042.1 3415037..3416476(+) (rpoN/rpoN1) [Aeromonas enteropelogenes strain FDAARGOS_1509]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAATCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCTCTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAATCCCCTGCTGGAGCAGGAAGAGAGCGAGG
TGCAGGAGACATCCCCGCAAGATCAGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAGTTGCCGGTGGATACGACCTGGGACGAGGTCTATTCCGCGGGGACGGCCCAGAGTGCCGGACCCATCCATGATGG
GGATGACACCGTCTACCAGGGGGAGACCACAGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATGTGGATGCCGCCATCGCGCTTGCCATCATAGATGCCATCGACGAATCCGGTTATCTGACAGTGTCGCTGGAGGAT
ATCCAGACGGCGGTGAGCAGCGACGAGGTGGAAGTCGAACTCGACGAAATCGAGGTCGTGCTCAAGCGGGTGCAACACTT
CGATCCCGTGGGTATTGCCGCCCGTTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGAACAGTACGACCCCGAGACTCCCT
GGATCAGTGAGGCCAAGGAGGTGATCCAGGAGCACATGGATCTGCTTGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGTTGGAACCGCGGCCGGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCGGACGTTTCCGTGGTCAAACGGCAGAATCGCTGGGTGGTGGAACTCAATCCCG
ATTCATCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCTATGGCCCGGAACGCCCGTAGCAGCACGGATACCCAGTTT
ATCCGCTCCCACTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGACACCCTGTTGAAAGTGGCCAG
CTGCATCGTCGAGCAGCAACAGGGCTTTTTCGAATATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGATATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCCCGTGTAACAACCCAGAAATACATGCATACCCCCCGCGGTATTTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAATACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATCCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTACCGCGAATCCCTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.686

100

0.486