Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LA321_RS04800 Genome accession   NZ_CP083625
Coordinates   1028220..1029659 (-) Length   479 a.a.
NCBI ID   WP_042070883.1    Uniprot ID   A0AAU6T7T1
Organism   Aeromonas enteropelogenes strain FDAARGOS_1510     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023220..1034659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA321_RS04770 (LA321_04770) - 1023580..1024941 (+) 1362 WP_026456105.1 Do family serine endopeptidase -
  LA321_RS04775 (LA321_04775) degS 1025032..1026135 (+) 1104 WP_026456106.1 outer membrane-stress sensor serine endopeptidase DegS -
  LA321_RS04780 (LA321_04780) npr 1026257..1026529 (-) 273 WP_026456107.1 PTS phosphocarrier protein NPr -
  LA321_RS04785 (LA321_04785) rapZ 1026550..1027416 (-) 867 WP_042070881.1 RNase adapter RapZ -
  LA321_RS04790 (LA321_04790) ptsN 1027462..1027908 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LA321_RS04795 (LA321_04795) hpf 1027911..1028198 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  LA321_RS04800 (LA321_04800) rpoN/rpoN1 1028220..1029659 (-) 1440 WP_042070883.1 RNA polymerase factor sigma-54 Machinery gene
  LA321_RS04805 (LA321_04805) lptB 1029725..1030450 (-) 726 WP_026456111.1 LPS export ABC transporter ATP-binding protein -
  LA321_RS04810 (LA321_04810) lptA 1030454..1030981 (-) 528 WP_026456112.1 lipopolysaccharide transport periplasmic protein LptA -
  LA321_RS04815 (LA321_04815) lptC 1030968..1031528 (-) 561 WP_026456113.1 LPS export ABC transporter periplasmic protein LptC -
  LA321_RS04820 (LA321_04820) kdsC 1031525..1032079 (-) 555 WP_042070885.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LA321_RS04825 (LA321_04825) - 1032079..1033074 (-) 996 WP_042070887.1 KpsF/GutQ family sugar-phosphate isomerase -
  LA321_RS04830 (LA321_04830) mlaF 1033282..1034082 (+) 801 WP_026456358.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54020.83 Da        Isoelectric Point: 4.3230

>NTDB_id=606738 LA321_RS04800 WP_042070883.1 1028220..1029659(-) (rpoN/rpoN1) [Aeromonas enteropelogenes strain FDAARGOS_1510]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALENNPLLEQEESEVQETSPQDQVDASQLDSSDAMAQDQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGDDTVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSDEVEVELDEIEVVLKRVQHFDPVGIAARSVQECLLIQLEQYDPETPWISEAKEVIQEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSSPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=606738 LA321_RS04800 WP_042070883.1 1028220..1029659(-) (rpoN/rpoN1) [Aeromonas enteropelogenes strain FDAARGOS_1510]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAATCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCTCTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAATCCCCTGCTGGAGCAGGAAGAGAGCGAGG
TGCAGGAGACATCCCCGCAAGATCAGGTTGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAGTTGCCGGTCGATACGACCTGGGACGAGGTCTATTCCGCGGGGACGGCCCAGAGTGCCGGACCCATCCATGATGG
GGATGACACCGTCTACCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATGTGGATGCCGCCATCGCGCTTGCCATCATAGATGCCATCGACGAATCCGGTTATCTGACAGTGTCGCTGGAAGAT
ATTCAGGCGGCGGTGAGCAGCGACGAAGTGGAGGTCGAACTCGATGAAATCGAGGTCGTGCTCAAGCGGGTGCAACACTT
CGATCCCGTGGGAATTGCCGCCCGTTCGGTGCAGGAGTGTCTGCTGATCCAGCTGGAACAGTACGACCCCGAGACTCCCT
GGATCAGTGAGGCCAAGGAGGTGATCCAGGAGCACATGGATCTGCTTGGCAATCGCGATTACCGCACCCTGGCCCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGGCCGGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCGGACGTCTCCGTAGTCAAACGGCAGAATCGCTGGGTGGTTGAACTCAATCCCG
ATTCATCCCCGCGCATTCGGGTCAACGAGACCTATGCCGCTATGGCACGTAATGCCCGTAGCAGCACGGATACCCAGTTT
ATCCGCTCCCACTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTTGAGAGCCGTAACGACACCCTGTTGAAAGTGGCCAG
CTGCATCGTCGAGCAGCAACAGGGCTTTTTCGAATATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGATATCGCCG
AAGCGGTGGAAATGCACGAGTCGACCATCTCCCGTGTAACAACCCAGAAATACATGCATACCCCCCGCGGTATTTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAATACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATCCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTACCGCGAATCCCTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.882

100

0.489