Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LA327_RS00985 Genome accession   NZ_CP083622
Coordinates   213473..215293 (+) Length   606 a.a.
NCBI ID   WP_008792457.1    Uniprot ID   -
Organism   Thomasclavelia ramosa strain FDAARGOS_1519     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 208473..220293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA327_RS00965 (LA327_00965) - 209333..209716 (+) 384 WP_003535240.1 DUF956 family protein -
  LA327_RS00970 (LA327_00970) - 209884..210564 (+) 681 WP_003535239.1 response regulator transcription factor -
  LA327_RS00975 (LA327_00975) - 210551..211606 (+) 1056 WP_003535238.1 sensor histidine kinase -
  LA327_RS00980 (LA327_00980) rcrP 211716..213473 (+) 1758 WP_008792458.1 ABC transporter ATP-binding protein Regulator
  LA327_RS00985 (LA327_00985) rcrQ 213473..215293 (+) 1821 WP_008792457.1 ABC transporter ATP-binding protein Regulator
  LA327_RS00990 (LA327_00990) - 215419..216267 (-) 849 WP_003535235.1 Cof-type HAD-IIB family hydrolase -
  LA327_RS00995 (LA327_00995) - 216541..217161 (-) 621 WP_003535234.1 ECF transporter S component -
  LA327_RS01000 (LA327_01000) - 217330..218298 (-) 969 WP_008792456.1 P1 family peptidase -
  LA327_RS01005 (LA327_01005) - 218449..219114 (+) 666 WP_008792455.1 DUF5680 domain-containing protein -
  LA327_RS01010 (LA327_01010) - 219178..219318 (+) 141 WP_003535231.1 hypothetical protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 67621.43 Da        Isoelectric Point: 8.5081

>NTDB_id=606711 LA327_RS00985 WP_008792457.1 213473..215293(+) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_1519]
MAEGKYLEKNDLKAPGVNMGSKEKSKDFKETWLKLLKYCRKYWIVMVMAIISAIFGTILTLIGPDRLSELTDLITNGIMT
GIDMTRIGKIGLTLVGFYVTSAFFSLFQGFVMATVTQWVTKNLRRDISRKINRLPISFYNHTSTGDILSRVTNDIDMIGQ
SLNQSVGTLVSSVTLLAGSLIMMLKTNLIMTFTAVLATVIGFALMLVIMSKSQKYFARQQKHLGEINGYVEEIYTGHTIV
KAYNGEVKAKEAFTRQNNNLRNSGFKAQCLSGLMMPIMSFIGNFGYVAVCIIGAALAMSGDISFGVIVAFMMYIRYFTQP
LSQLAQAAQSLQSAAAAGERVFEFLEAQEMADESHKVKRLSKAKGGVEFRHVHFGYDSNKIIINDFSARAEPGQKIAIVG
PTGAGKTTIINLLMRFYEVDRGEIRIDNIPTKDLRREDVHGQFCMVLQDTWLFEGTVRENLVYNTKNISNQIIEEACKAV
GLDHFIRTLPYGYDTVLNDQVNLSQGQKQQLTIARAMIADKPMLILDEATSSVDTRTELQIQKAMDELMEGRTSFVIAHR
LSTIKNADLILVMKDGDIIESGNHEDLLSRGGFYAELYNSQFDKAV

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=606711 LA327_RS00985 WP_008792457.1 213473..215293(+) (rcrQ) [Thomasclavelia ramosa strain FDAARGOS_1519]
ATGGCAGAAGGAAAGTATTTAGAGAAAAATGATTTAAAAGCTCCTGGGGTTAATATGGGTAGTAAAGAAAAATCTAAAGA
TTTTAAGGAAACATGGTTAAAATTGTTAAAATATTGTAGAAAGTATTGGATTGTAATGGTTATGGCAATTATCAGTGCCA
TATTTGGAACAATATTAACCTTGATAGGTCCAGACAGATTATCAGAATTAACAGATTTAATTACAAATGGAATAATGACG
GGAATTGATATGACAAGGATTGGTAAAATTGGTCTTACATTAGTCGGATTTTATGTTACTAGTGCTTTTTTTTCTTTATT
TCAGGGATTTGTCATGGCAACAGTAACTCAGTGGGTTACTAAAAATTTAAGAAGAGATATTTCGCGTAAAATTAATCGCT
TGCCAATTAGTTTTTATAATCATACTTCAACTGGTGATATATTATCGAGAGTTACCAACGATATTGATATGATTGGACAA
TCATTAAATCAGAGTGTTGGAACATTAGTTTCATCAGTCACTTTATTAGCTGGTTCACTTATAATGATGTTAAAAACTAA
TCTCATTATGACTTTTACTGCAGTTCTAGCAACGGTTATAGGTTTTGCTTTAATGCTGGTAATTATGTCTAAATCGCAAA
AATATTTTGCTCGCCAGCAAAAACATCTTGGTGAAATCAATGGATATGTTGAAGAAATTTATACTGGTCATACGATTGTT
AAGGCTTATAATGGTGAAGTTAAGGCAAAAGAAGCTTTTACAAGACAGAATAATAATTTACGTAATAGTGGTTTTAAGGC
CCAATGCTTATCTGGATTAATGATGCCAATCATGAGTTTTATTGGTAACTTTGGATACGTAGCAGTATGCATTATTGGCG
CTGCATTAGCAATGAGTGGAGATATATCATTTGGAGTAATTGTAGCATTTATGATGTATATTAGATATTTTACTCAGCCA
TTATCACAGTTAGCTCAAGCAGCTCAATCATTACAGTCAGCGGCTGCAGCAGGAGAGCGTGTATTTGAATTTTTAGAAGC
TCAAGAAATGGCTGATGAGAGTCATAAAGTAAAACGCTTGTCCAAAGCCAAAGGTGGAGTAGAATTTAGACATGTTCATT
TTGGTTATGATAGCAATAAGATTATTATTAATGATTTTTCTGCTCGTGCTGAACCTGGTCAAAAGATTGCTATTGTTGGG
CCAACTGGAGCTGGTAAAACAACGATAATCAACTTATTGATGCGTTTTTACGAAGTTGATCGTGGCGAAATTAGAATTGA
TAATATTCCAACTAAAGATTTACGTCGAGAAGATGTCCACGGACAATTCTGTATGGTTCTTCAAGATACGTGGCTTTTTG
AAGGAACAGTGCGTGAGAATTTGGTTTATAATACTAAAAATATATCTAATCAGATAATTGAAGAAGCATGTAAAGCAGTA
GGCTTAGATCATTTTATCAGAACACTTCCATATGGTTATGATACGGTACTTAATGATCAAGTAAATTTATCACAAGGACA
AAAACAACAGTTGACGATTGCTCGAGCGATGATTGCTGATAAACCAATGTTGATTCTTGATGAAGCTACTAGTTCAGTAG
ATACTAGAACAGAGTTACAGATTCAAAAGGCCATGGATGAATTAATGGAGGGACGAACTTCCTTTGTTATTGCGCATCGT
CTTTCAACAATTAAAAACGCAGATTTAATTCTAGTAATGAAAGATGGTGATATTATTGAAAGTGGAAATCATGAAGATTT
ATTAAGTCGTGGTGGTTTCTATGCAGAGCTTTATAATAGTCAGTTTGATAAAGCTGTATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-321)

ABC transporter (ABC_tran)

(384-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.894

94.554

0.538