Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LA327_RS00980 Genome accession   NZ_CP083622
Coordinates   211716..213473 (+) Length   585 a.a.
NCBI ID   WP_008792458.1    Uniprot ID   -
Organism   Thomasclavelia ramosa strain FDAARGOS_1519     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 206716..218473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA327_RS00955 (LA327_00955) - 207534..208349 (+) 816 WP_003535242.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  LA327_RS00960 (LA327_00960) - 208373..209290 (+) 918 WP_003535241.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  LA327_RS00965 (LA327_00965) - 209333..209716 (+) 384 WP_003535240.1 DUF956 family protein -
  LA327_RS00970 (LA327_00970) - 209884..210564 (+) 681 WP_003535239.1 response regulator transcription factor -
  LA327_RS00975 (LA327_00975) - 210551..211606 (+) 1056 WP_003535238.1 sensor histidine kinase -
  LA327_RS00980 (LA327_00980) rcrP 211716..213473 (+) 1758 WP_008792458.1 ABC transporter ATP-binding protein Regulator
  LA327_RS00985 (LA327_00985) rcrQ 213473..215293 (+) 1821 WP_008792457.1 ABC transporter ATP-binding protein Regulator
  LA327_RS00990 (LA327_00990) - 215419..216267 (-) 849 WP_003535235.1 Cof-type HAD-IIB family hydrolase -
  LA327_RS00995 (LA327_00995) - 216541..217161 (-) 621 WP_003535234.1 ECF transporter S component -
  LA327_RS01000 (LA327_01000) - 217330..218298 (-) 969 WP_008792456.1 P1 family peptidase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64732.32 Da        Isoelectric Point: 7.0160

>NTDB_id=606710 LA327_RS00980 WP_008792458.1 211716..213473(+) (rcrP) [Thomasclavelia ramosa strain FDAARGOS_1519]
MIKIFKNFTKKDWSLIIICLAFIILQVWLDLKLPDYMSKITMLVQTTGSTMDEIIESGVKMLGCALGSLASSVVVAIFAA
RVATNFAANLRERLFDKVQAFSMEEIGSFSTASLITRSTNDISQIQTLVVMGLQAIIKAPIMAVWAIFKIAGKSWQWTAS
TGVAVIVLLVIVGSCMIFALPKFKKLQQLTDDLNRVTRENLTGISVVRAYNAENYQENKFENANQELTSANLFANRVMAI
MSPGIQGIMSGLTLAIYWIGAILIENAAMMDKLNLFSDMVVFSTYAMQVVMAFMMLVMIFIMFPRASVSSKRIMEVLETV
PIINDGTVTVAKPGIKGQIEFKNVSFKYPDAEDYVLQNITFTVAQGETVAFIGSTGCGKSTVINLVPRFYDVTEGEVLVD
GINVKAYTQYVLHNKIGYVSQKAVLFSGTIESNVAYGDNGRNNNLQNNVIDAIYTAQASDFVEASPRRYNSYVAQGGSNY
SGGQKQRISIARAICRQPEIMIFDDSFSALDYKTDQKLREALKKDCCDATKLIVAQRIGTIRDADKIIVLDEGVIVGMGT
HEDLMKNCQVYQQIARSQLSKEELE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=606710 LA327_RS00980 WP_008792458.1 211716..213473(+) (rcrP) [Thomasclavelia ramosa strain FDAARGOS_1519]
ATGATAAAAATATTTAAAAACTTTACTAAAAAAGATTGGAGCTTAATTATTATCTGTCTAGCATTTATTATTTTACAAGT
ATGGTTAGATCTTAAACTCCCAGATTATATGTCAAAAATAACAATGCTAGTCCAAACAACAGGAAGTACAATGGATGAAA
TAATTGAGTCAGGTGTAAAGATGTTAGGATGTGCATTAGGAAGTTTAGCTTCATCGGTAGTTGTAGCAATCTTTGCAGCA
AGGGTAGCTACAAATTTTGCTGCTAATTTAAGAGAGCGATTGTTTGATAAAGTACAAGCTTTTTCAATGGAAGAAATTGG
TAGTTTCTCAACAGCAAGTCTGATTACACGTTCAACTAATGATATTTCACAAATTCAAACACTTGTTGTAATGGGATTAC
AAGCTATTATTAAGGCACCGATTATGGCTGTTTGGGCAATTTTCAAGATTGCTGGTAAAAGCTGGCAATGGACAGCTTCA
ACGGGTGTAGCTGTAATCGTTTTATTAGTTATTGTAGGAAGTTGCATGATTTTTGCATTACCAAAATTTAAAAAATTACA
ACAGTTGACAGATGATTTGAATCGGGTTACTCGTGAAAATTTAACGGGAATAAGTGTTGTTCGGGCTTATAATGCTGAGA
ATTATCAAGAGAATAAATTTGAAAATGCCAATCAGGAGTTAACCTCAGCAAACTTGTTTGCAAACCGAGTTATGGCAATC
ATGAGTCCAGGAATTCAAGGAATCATGAGTGGTCTGACATTGGCCATTTATTGGATTGGAGCCATCCTGATTGAAAATGC
TGCTATGATGGATAAACTAAACTTATTTTCAGATATGGTGGTATTTTCTACATATGCAATGCAAGTAGTTATGGCTTTTA
TGATGCTTGTTATGATTTTTATAATGTTTCCAAGAGCATCGGTTTCATCAAAGCGAATCATGGAAGTATTAGAAACAGTA
CCAATAATTAATGATGGTACAGTAACTGTCGCTAAACCGGGTATTAAAGGACAAATTGAATTTAAAAATGTCAGTTTTAA
ATATCCTGATGCTGAAGATTATGTTTTACAAAATATTACTTTTACTGTTGCTCAAGGAGAAACAGTTGCTTTTATCGGTT
CAACTGGATGCGGTAAAAGTACAGTGATTAATCTAGTTCCACGTTTTTATGATGTAACAGAAGGTGAAGTACTCGTAGAT
GGGATTAATGTTAAAGCTTATACACAATATGTCTTACATAACAAAATCGGTTATGTATCCCAAAAAGCAGTTCTTTTTAG
TGGAACTATTGAATCTAATGTTGCCTATGGTGATAATGGTAGAAATAATAATCTTCAAAACAATGTCATTGATGCCATTT
ATACAGCTCAAGCTTCTGATTTTGTTGAGGCTTCACCACGCCGATATAATAGCTATGTTGCCCAAGGCGGTTCTAATTAC
TCAGGTGGGCAAAAGCAACGGATTTCTATTGCCCGGGCAATATGTCGTCAACCCGAAATTATGATTTTTGATGATTCGTT
TTCTGCACTAGACTATAAAACAGATCAAAAACTTCGAGAAGCTTTAAAGAAAGATTGTTGCGATGCTACCAAATTGATCG
TTGCTCAACGAATTGGTACGATTCGAGATGCTGATAAAATTATTGTTCTTGATGAAGGGGTTATTGTAGGGATGGGAACA
CATGAAGACTTAATGAAGAATTGTCAAGTTTACCAACAAATAGCTCGTTCACAGTTATCAAAGGAGGAATTAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(16-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.424

100

0.525