Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | K748_RS03560 | Genome accession | NC_021882 |
| Coordinates | 724613..725188 (+) | Length | 191 a.a. |
| NCBI ID | WP_015645748.1 | Uniprot ID | - |
| Organism | Helicobacter pylori UM298 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 719613..730188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K748_RS03535 (K748_04940) | uvrD | 720304..722349 (+) | 2046 | WP_015645743.1 | DNA helicase UvrD | - |
| K748_RS03540 (K748_04945) | flgA | 722346..723002 (+) | 657 | WP_015645744.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| K748_RS03545 (K748_04950) | - | 723012..723575 (+) | 564 | WP_015645745.1 | UbiX family flavin prenyltransferase | - |
| K748_RS03550 (K748_04955) | coaD | 723575..724048 (+) | 474 | WP_015645746.1 | pantetheine-phosphate adenylyltransferase | - |
| K748_RS03555 (K748_04960) | tmk | 724050..724625 (+) | 576 | WP_015645747.1 | dTMP kinase | - |
| K748_RS03560 (K748_04965) | comFC | 724613..725188 (+) | 576 | WP_015645748.1 | ComF family protein | Machinery gene |
| K748_RS03565 (K748_04970) | - | 725221..727260 (+) | 2040 | WP_015645749.1 | N-6 DNA methylase | - |
| K748_RS08280 | - | 727257..728490 (+) | 1234 | Protein_702 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21227.77 Da Isoelectric Point: 8.7493
>NTDB_id=60669 K748_RS03560 WP_015645748.1 724613..725188(+) (comFC) [Helicobacter pylori UM298]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=60669 K748_RS03560 WP_015645748.1 724613..725188(+) (comFC) [Helicobacter pylori UM298]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |