Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   K748_RS02805 Genome accession   NC_021882
Coordinates   568311..568592 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori UM298     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563311..573592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K748_RS02790 (K748_04170) - 564020..565360 (-) 1341 WP_015645625.1 hypothetical protein -
  K748_RS02795 (K748_04175) comB4 565682..568045 (-) 2364 WP_015645626.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  K748_RS02800 (K748_04180) comB3 568048..568311 (-) 264 WP_015645627.1 hypothetical protein Machinery gene
  K748_RS02805 (K748_04185) comB2 568311..568592 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  K748_RS02810 (K748_04190) - 568738..569565 (-) 828 WP_015645628.1 DUF5718 family protein -
  K748_RS02815 (K748_04200) - 569867..570919 (-) 1053 WP_015645630.1 MnmA/TRMU family protein -
  K748_RS02820 (K748_04205) dnaG 570916..572595 (-) 1680 WP_020849767.1 DNA primase -
  K748_RS02825 (K748_04210) groES 572872..573228 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=60667 K748_RS02805 WP_001272686.1 568311..568592(-) (comB2) [Helicobacter pylori UM298]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=60667 K748_RS02805 WP_001272686.1 568311..568592(-) (comB2) [Helicobacter pylori UM298]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment