Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   K748_RS02800 Genome accession   NC_021882
Coordinates   568048..568311 (-) Length   87 a.a.
NCBI ID   WP_015645627.1    Uniprot ID   -
Organism   Helicobacter pylori UM298     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563048..573311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K748_RS02790 (K748_04170) - 564020..565360 (-) 1341 WP_015645625.1 hypothetical protein -
  K748_RS02795 (K748_04175) comB4 565682..568045 (-) 2364 WP_015645626.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  K748_RS02800 (K748_04180) comB3 568048..568311 (-) 264 WP_015645627.1 hypothetical protein Machinery gene
  K748_RS02805 (K748_04185) comB2 568311..568592 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  K748_RS02810 (K748_04190) - 568738..569565 (-) 828 WP_015645628.1 DUF5718 family protein -
  K748_RS02815 (K748_04200) - 569867..570919 (-) 1053 WP_015645630.1 MnmA/TRMU family protein -
  K748_RS02820 (K748_04205) dnaG 570916..572595 (-) 1680 WP_020849767.1 DNA primase -
  K748_RS02825 (K748_04210) groES 572872..573228 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10134.25 Da        Isoelectric Point: 9.5507

>NTDB_id=60666 K748_RS02800 WP_015645627.1 568048..568311(-) (comB3) [Helicobacter pylori UM298]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSTFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=60666 K748_RS02800 WP_015645627.1 568048..568311(-) (comB3) [Helicobacter pylori UM298]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCACTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

94.253

100

0.943

Multiple sequence alignment