Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LA353_RS09420 Genome accession   NZ_CP083613
Coordinates   1995080..1995706 (+) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei subsp. oharae strain FDAARGOS_1533     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990080..2000706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA353_RS09400 (LA353_09395) - 1990479..1992239 (-) 1761 WP_047051699.1 Lon protease family protein -
  LA353_RS09405 (LA353_09400) matP 1992426..1992878 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  LA353_RS09410 (LA353_09405) ompA 1992944..1993996 (-) 1053 WP_017694761.1 porin OmpA -
  LA353_RS09415 (LA353_09410) sulA 1994353..1994862 (-) 510 WP_048981967.1 SOS-induced cell division inhibitor SulA -
  LA353_RS09420 (LA353_09415) sxy/tfoX 1995080..1995706 (+) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  LA353_RS09425 (LA353_09420) yccS 1995663..1997825 (-) 2163 WP_047051698.1 YccS family putative transporter -
  LA353_RS09430 (LA353_09425) - 1997844..1998290 (-) 447 WP_003858149.1 YccF domain-containing protein -
  LA353_RS09435 (LA353_09430) helD 1998413..2000467 (+) 2055 WP_047051697.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=606655 LA353_RS09420 WP_023299743.1 1995080..1995706(+) (sxy/tfoX) [Enterobacter hormaechei subsp. oharae strain FDAARGOS_1533]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=606655 LA353_RS09420 WP_023299743.1 1995080..1995706(+) (sxy/tfoX) [Enterobacter hormaechei subsp. oharae strain FDAARGOS_1533]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCTGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACATTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGAGCAAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572