Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   K748_RS02670 Genome accession   NC_021882
Coordinates   535224..536537 (-) Length   437 a.a.
NCBI ID   WP_015645604.1    Uniprot ID   -
Organism   Helicobacter pylori UM298     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 530224..541537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K748_RS02640 (K748_04005) nadC 530687..531508 (-) 822 WP_015645599.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K748_RS02645 (K748_04010) nadA 531508..532518 (-) 1011 WP_015645600.1 quinolinate synthase NadA -
  K748_RS02650 (K748_04015) - 532508..533311 (-) 804 WP_015645601.1 phosphatidylserine decarboxylase -
  K748_RS02655 (K748_04020) - 533308..533811 (-) 504 WP_000953106.1 hypothetical protein -
  K748_RS02660 (K748_04025) - 533824..534318 (-) 495 WP_015645602.1 hypothetical protein -
  K748_RS02665 (K748_04030) mqnP 534311..535153 (-) 843 WP_229764456.1 menaquinone biosynthesis prenyltransferase MqnP -
  K748_RS02670 (K748_04035) comEC/comE3 535224..536537 (-) 1314 WP_015645604.1 ComEC/Rec2 family competence protein Machinery gene
  K748_RS02675 (K748_04040) - 536534..537994 (-) 1461 WP_015645605.1 replicative DNA helicase -
  K748_RS02680 (K748_04045) - 538005..539399 (-) 1395 WP_015645606.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  K748_RS02685 (K748_04050) crdS 539402..540604 (-) 1203 WP_080288907.1 copper-sensing histidine kinase CrdS -
  K748_RS02690 (K748_04055) crdR 540570..541211 (-) 642 WP_015645608.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50063.08 Da        Isoelectric Point: 9.8515

>NTDB_id=60663 K748_RS02670 WP_015645604.1 535224..536537(-) (comEC/comE3) [Helicobacter pylori UM298]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQAISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=60663 K748_RS02670 WP_015645604.1 535224..536537(-) (comEC/comE3) [Helicobacter pylori UM298]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCACAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCTATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAATGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATTT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGCCATAAGCTTAAGC
GCATTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959

Multiple sequence alignment