Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LA358_RS00660 Genome accession   NZ_CP083612
Coordinates   131311..132750 (-) Length   479 a.a.
NCBI ID   WP_224210550.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain FDAARGOS_1536     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126311..137750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA358_RS00630 (LA358_00630) - 126671..128032 (+) 1362 WP_026456105.1 Do family serine endopeptidase -
  LA358_RS00635 (LA358_00635) degS 128123..129226 (+) 1104 WP_026456106.1 outer membrane-stress sensor serine endopeptidase DegS -
  LA358_RS00640 (LA358_00640) npr 129348..129620 (-) 273 WP_026456107.1 PTS phosphocarrier protein NPr -
  LA358_RS00645 (LA358_00645) rapZ 129641..130507 (-) 867 WP_042070881.1 RNase adapter RapZ -
  LA358_RS00650 (LA358_00650) ptsN 130553..130999 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LA358_RS00655 (LA358_00655) hpf 131002..131289 (-) 288 WP_224210549.1 ribosome hibernation promoting factor -
  LA358_RS00660 (LA358_00660) rpoN/rpoN1 131311..132750 (-) 1440 WP_224210550.1 RNA polymerase factor sigma-54 Machinery gene
  LA358_RS00665 (LA358_00665) lptB 132816..133541 (-) 726 WP_026456111.1 LPS export ABC transporter ATP-binding protein -
  LA358_RS00670 (LA358_00670) lptA 133545..134072 (-) 528 WP_224211546.1 lipopolysaccharide transport periplasmic protein LptA -
  LA358_RS00675 (LA358_00675) lptC 134059..134619 (-) 561 WP_224210551.1 LPS export ABC transporter periplasmic protein LptC -
  LA358_RS00680 (LA358_00680) kdsC 134616..135170 (-) 555 WP_124239993.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LA358_RS00685 (LA358_00685) - 135170..136165 (-) 996 WP_224210552.1 KpsF/GutQ family sugar-phosphate isomerase -
  LA358_RS00690 (LA358_00690) mlaF 136373..137173 (+) 801 WP_224210553.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54046.87 Da        Isoelectric Point: 4.3391

>NTDB_id=606620 LA358_RS00660 WP_224210550.1 131311..132750(-) (rpoN/rpoN1) [Aeromonas enteropelogenes strain FDAARGOS_1536]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALENNPLLEQEESEVQETSPQDQVDASQLDSSDAMAQDQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGDDTVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSDEVEVELDEIEVVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVIQEHMELLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSSPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=606620 LA358_RS00660 WP_224210550.1 131311..132750(-) (rpoN/rpoN1) [Aeromonas enteropelogenes strain FDAARGOS_1536]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAATCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCTCTCTGGAACTTCAGCAGGAAATTCAGCAAGCACTCGAAAACAATCCCCTGCTGGAGCAGGAAGAGAGCGAGG
TGCAGGAGACATCCCCGCAAGATCAGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAGTTGCCGGTGGATACGACCTGGGACGAGGTCTATTCCGCGGGGACGGCCCAGAGTGCCGGACCCATCCATGATGG
GGATGACACCGTCTACCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATGTGGATGCGGCCATCGCGCTTGCCATCATAGATGCCATCGACGAATCCGGTTATCTGACAGTGTCGCTGGAGGAT
ATCCAGGCGGCGGTGAGCAGCGATGAAGTGGAAGTCGAACTCGACGAAATCGAGGTCGTGCTCAAACGGGTGCAGCACTT
CGATCCCGTGGGGATCGCAGCTCGTTCGGTACAGGAGTGCCTGCTGATCCAGCTGGATCAATATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCAGGAGCATATGGAACTGCTTGGCAACCGCGATTACCGCACTCTGGCCCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGGCCGGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCGGACGTCTCCGTAGTCAAACGGCAGAATCGCTGGGTGGTTGAACTCAATCCCG
ATTCATCCCCGCGCATTCGGGTCAACGAGACCTATGCTGCTATGGCACGTAATGCCCGTAGCAGCACGGATACCCAGTTT
ATCCGCTCCCACTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTTGAGAGCCGTAACGACACCCTGTTGAAAGTGGCCAG
CTGCATCGTCGAGCAGCAACAGGGTTTTTTCGAATATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGATATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCCCGTGTAACAACCCAGAAATACATGCATACCCCCCGCGGTATTTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAATACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATCCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTACCGCGAATCCCTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.184

100

0.493