NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LAU39_RS11330	Genome accession	NZ_CP083602
Coordinates	2113237..2114598 (-)	Length	453 a.a.
NCBI ID	WP_224187368.1	Uniprot ID	-
Organism	Macrococcus armenti strain JEK29
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2108237..2119598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAU39_RS11305 (LAU39_11305)	cysE	2108666..2109307 (-)	642	WP_420907964.1	serine O-acetyltransferase	-
LAU39_RS11310 (LAU39_11310)	gltX	2109554..2111008 (-)	1455	WP_224187364.1	glutamate--tRNA ligase	-
LAU39_RS11315 (LAU39_11315)	ispF	2111026..2111502 (-)	477	WP_224187365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LAU39_RS11320 (LAU39_11320)	ispD	2111499..2112173 (-)	675	WP_338145594.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LAU39_RS11325 (LAU39_11325)	-	2112175..2113224 (-)	1050	WP_224187367.1	PIN/TRAM domain-containing protein	-
LAU39_RS11330 (LAU39_11330)	radA	2113237..2114598 (-)	1362	WP_224187368.1	DNA repair protein RadA	Machinery gene
LAU39_RS11335 (LAU39_11335)	-	2114702..2117125 (-)	2424	WP_224187369.1	ATP-dependent Clp protease ATP-binding subunit	-
LAU39_RS11340 (LAU39_11340)	-	2117137..2118144 (-)	1008	WP_224187370.1	protein arginine kinase	-
LAU39_RS11345 (LAU39_11345)	-	2118134..2118520 (-)	387	WP_224187371.1	UvrB/UvrC motif-containing protein	-
LAU39_RS11350 (LAU39_11350)	-	2118532..2118987 (-)	456	WP_224187372.1	CtsR family transcriptional regulator	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 50218.73 Da Isoelectric Point: 7.4625

                                >NTDB_id=606535 LAU39_RS11330 WP_224187368.1 2113237..2114598(-) (radA) [Macrococcus armenti strain JEK29]

MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKHKGPKNAISESSSNNKVEKLKNITKESVPRDYTQMKELDR

VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAILSQQHPVLYISGEESVRQTKLRADRLNEDAGELDVYAETNLQIIHETV

KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD

THHSYRVLRAVKNRFGSTNEMGIFEMKNTGLSEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP

RRMASGVDHNRLNLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV

RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVVGVTNINEALRFAF

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=606535 LAU39_RS11330 WP_224187368.1 2113237..2114598(-) (radA) [Macrococcus armenti strain JEK29]

TTGGCAAAGGTAAAAAGTACATTTGAATGTATGGCATGTGGCTACCAGTCACCGAAATGGATGGGAAAGTGTCCAAATTG

TGGTGCATGGAATCAAATGGAAGAAGTAATTGAGCATAAACATAAAGGCCCTAAAAATGCGATTTCTGAATCCAGTAGTA

ATAATAAAGTTGAAAAACTAAAAAATATTACGAAAGAAAGTGTACCTCGTGATTACACACAAATGAAAGAGCTGGATCGC

GTACTTGGTGGCGGCATTGTCCCTGGGTCTTTAATCCTTATCGGCGGAGATCCTGGTATCGGGAAATCGACATTGCTGCT

GCAAGTGTGTGCCATATTATCACAGCAACATCCGGTGTTATATATATCGGGTGAGGAATCTGTCAGACAGACGAAACTGC

GTGCAGATCGATTGAATGAAGATGCTGGAGAGCTTGATGTGTATGCTGAGACGAACCTTCAGATTATCCACGAAACCGTT

AAGAAAACGAAACCTAAATTTCTTGTTATTGACTCTATCCAAACTATATTTCACCCAGAAGTGACGAGTGCACCAGGTTC

TGTATCTCAAGTAAGAGAATGTACGCAGGAATTGATGCGTATTGCAAAACAAATGAACATTGCAACGTTTATCGTTGGAC

ACGTAACAAAAGAAGGACAAATCGCAGGCCCGAGATTATTGGAGCATATGGTAGATACCGTATTATACTTTGAAGGTGAT

ACGCACCATAGTTATCGTGTGTTACGTGCTGTTAAAAACCGTTTCGGCTCAACAAATGAAATGGGTATATTCGAAATGAA

AAACACAGGACTTTCTGAAGTGCTGAATCCTTCTGAAATGTTTCTGGAAGAACGTACGAAGAATGTTGCGGGCTCAACGA

TTGTCGCAACGATGGAAGGAACAAGACCTCTTCTTGTTGAAGTGCAGTCACTTGTAACGCCGACTTCATTTCATAACCCG

AGACGAATGGCTTCAGGAGTCGATCACAATCGACTGAACTTATTAATGGCAGTTCTCGAGAAAAAACAAGGGTATTTATT

ACAGCAGCAGGATGCATATGTAAAAGTTGCAGGTGGCGTGAAACTGGATGAACCAGCTGTAGATTTAAGTATTATTATTA

GCATTGCATCTAGTTATAACGATAAACCAACGCGTGGAGATGATTGTTTTATCGGAGAGGTAGGTTTAACAGGAGAAGTA

CGTCGTGTCGCACGTATTGAACAACGTGTACAGGAAGCCGAAAAGTTAGGCTTTAAACGCGTCATCATTCCGAAAAATAA

TATTGGCGGTTGGGATTTCCCGGGCAATATTGAAGTTGTCGGTGTGACAAATATAAACGAAGCATTAAGATTCGCATTTT

AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(70-219)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	66.447	100	0.669
radA	Streptococcus pneumoniae Rx1	61.674	100	0.618
radA	Streptococcus pneumoniae D39	61.674	100	0.618
radA	Streptococcus pneumoniae R6	61.674	100	0.618
radA	Streptococcus pneumoniae TIGR4	61.674	100	0.618
radA	Streptococcus mitis SK321	61.674	100	0.618
radA	Streptococcus mitis NCTC 12261	61.674	100	0.618

Detailed information NTG0606535