Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMD57_RS18025 Genome accession   NZ_CP100895
Coordinates   3606670..3607275 (-) Length   201 a.a.
NCBI ID   WP_370559811.1    Uniprot ID   -
Organism   Escherichia coli strain ET846     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3601670..3612275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD57_RS18005 (NMD57_17885) aes 3601707..3602666 (+) 960 WP_073544922.1 acetyl esterase -
  NMD57_RS18010 (NMD57_17890) hemH 3602663..3603625 (-) 963 WP_001250103.1 ferrochelatase -
  NMD57_RS18015 (NMD57_17895) adk 3603861..3604505 (-) 645 WP_001220233.1 adenylate kinase -
  NMD57_RS18020 (NMD57_17900) htpG 3604686..3606560 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NMD57_RS18025 (NMD57_17905) recR 3606670..3607275 (-) 606 WP_370559811.1 recombination mediator RecR Machinery gene
  NMD57_RS18030 (NMD57_17910) ybaB 3607275..3607604 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NMD57_RS18035 (NMD57_17915) dnaX 3607657..3609588 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NMD57_RS18040 (NMD57_17920) apt 3609717..3610268 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NMD57_RS18045 (NMD57_17925) ybaN 3610421..3610798 (-) 378 WP_001188905.1 DUF454 family protein -
  NMD57_RS18050 (NMD57_17930) priC 3610868..3611395 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NMD57_RS18055 (NMD57_17935) rsmS 3611409..3611570 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21931.99 Da        Isoelectric Point: 4.9097

>NTDB_id=606484 NMD57_RS18025 WP_370559811.1 3606670..3607275(-) (recR) [Escherichia coli strain ET846]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLPRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=606484 NMD57_RS18025 WP_370559811.1 3606670..3607275(-) (recR) [Escherichia coli strain ET846]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCCGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGACATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443