NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LAU43_RS11095	Genome accession	NZ_CP083595
Coordinates	2092493..2093854 (-)	Length	453 a.a.
NCBI ID	WP_224185422.1	Uniprot ID	-
Organism	Macrococcus armenti strain 17Msa1131
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2087493..2098854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAU43_RS11070 (LAU43_11070)	cysE	2087922..2088563 (-)	642	WP_420908090.1	serine O-acetyltransferase	-
LAU43_RS11075 (LAU43_11075)	gltX	2088810..2090264 (-)	1455	WP_224185419.1	glutamate--tRNA ligase	-
LAU43_RS11080 (LAU43_11080)	ispF	2090282..2090758 (-)	477	WP_224185420.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LAU43_RS11085 (LAU43_11085)	ispD	2090755..2091429 (-)	675	WP_338147528.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LAU43_RS11090 (LAU43_11090)	-	2091431..2092480 (-)	1050	WP_224185421.1	PIN/TRAM domain-containing protein	-
LAU43_RS11095 (LAU43_11095)	radA	2092493..2093854 (-)	1362	WP_224185422.1	DNA repair protein RadA	Machinery gene
LAU43_RS11100 (LAU43_11100)	-	2093958..2096381 (-)	2424	WP_224185423.1	ATP-dependent Clp protease ATP-binding subunit	-
LAU43_RS11105 (LAU43_11105)	-	2096393..2097400 (-)	1008	WP_224185424.1	protein arginine kinase	-
LAU43_RS11110 (LAU43_11110)	-	2097390..2097776 (-)	387	WP_224185425.1	UvrB/UvrC motif-containing protein	-
LAU43_RS11115 (LAU43_11115)	-	2097788..2098243 (-)	456	WP_224183633.1	CtsR family transcriptional regulator	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 50177.68 Da Isoelectric Point: 7.2378

                                >NTDB_id=606479 LAU43_RS11095 WP_224185422.1 2092493..2093854(-) (radA) [Macrococcus armenti strain 17Msa1131]

MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESDSNNKVEKLKNITKESVPRDHTQMKELDR

VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAILSQQHPVLYISGEESVRQTKLRADRLNEDAGELDVYAETNLQIIHETV

KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD

THHSYRVLRAVKNRFGSTNEMGIFEMKNTGLSEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP

RRMASGVDHNRLNLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV

RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVVGVTNINEALRLAF

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=606479 LAU43_RS11095 WP_224185422.1 2092493..2093854(-) (radA) [Macrococcus armenti strain 17Msa1131]

TTGGCAAAGGTAAAAAGTACATTTGAATGTATGGCATGTGGCTACCAGTCACCGAAATGGATGGGAAAGTGTCCAAATTG

TGGTGCATGGAATCAAATGGAAGAAGTAATTGAGCATAAACAGAAAGGCCCTAAAAATGCGATTTCAGAATCCGATAGTA

ATAATAAAGTTGAAAAACTAAAAAATATAACGAAAGAAAGCGTACCTCGTGATCACACACAAATGAAAGAGCTGGATCGC

GTACTCGGTGGCGGCATTGTCCCTGGGTCTTTAATCCTTATCGGCGGAGATCCTGGTATCGGGAAATCGACATTGCTGCT

GCAAGTGTGTGCCATATTATCACAGCAACATCCGGTGTTATATATATCGGGTGAGGAATCTGTCAGACAGACGAAACTGC

GTGCAGATCGATTGAATGAAGATGCTGGAGAGCTTGATGTGTATGCTGAGACGAACCTTCAAATTATCCACGAAACTGTT

AAGAAAACGAAACCTAAATTTCTTGTTATCGACTCTATCCAAACTATATTTCACCCAGAGGTGACGAGTGCACCAGGTTC

TGTATCTCAAGTAAGAGAATGTACGCAGGAATTGATGCGTATTGCAAAACAGATGAACATTGCAACGTTTATCGTTGGAC

ACGTAACAAAAGAAGGACAAATCGCAGGCCCGAGATTATTGGAGCATATGGTAGATACCGTATTATACTTTGAAGGTGAT

ACGCACCATAGTTATCGTGTGTTACGTGCTGTTAAAAACCGTTTCGGATCAACAAATGAAATGGGTATATTTGAAATGAA

AAACACAGGACTTTCTGAAGTGCTGAATCCTTCTGAAATGTTTCTGGAAGAACGTACGAAGAATGTTGCAGGTTCAACGA

TTGTCGCAACGATGGAAGGAACAAGACCTCTCCTTGTTGAAGTGCAGTCACTTGTAACGCCGACTTCATTTCATAACCCG

AGACGAATGGCTTCAGGAGTCGATCACAATCGACTGAACTTATTAATGGCAGTGCTCGAGAAAAAACAAGGGTATTTACT

GCAGCAACAGGATGCATATGTAAAAGTTGCAGGTGGCGTGAAACTGGATGAACCAGCTGTAGATTTAAGCATTATTATTA

GCATTGCATCTAGTTATAACGATAAACCAACGCGTGGAGATGATTGTTTTATCGGAGAGGTAGGTTTAACAGGAGAAGTA

CGTCGTGTCGCACGTATTGAACAACGTGTACAGGAAGCGGAAAAGTTAGGCTTTAAACGCGTCATCATTCCGAAAAATAA

TATTGGCGGTTGGGATTTCCCGGGCAATATTGAAGTTGTCGGTGTGACAAATATAAACGAAGCATTAAGACTCGCATTTT

AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(66-219)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	66.447	100	0.669
radA	Streptococcus pneumoniae Rx1	61.674	100	0.618
radA	Streptococcus pneumoniae D39	61.674	100	0.618
radA	Streptococcus pneumoniae R6	61.674	100	0.618
radA	Streptococcus pneumoniae TIGR4	61.674	100	0.618
radA	Streptococcus mitis NCTC 12261	61.674	100	0.618
radA	Streptococcus mitis SK321	61.674	100	0.618

Detailed information NTG0606479