Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD57_RS08800 Genome accession   NZ_CP100895
Coordinates   1814010..1815437 (-) Length   475 a.a.
NCBI ID   WP_000980611.1    Uniprot ID   -
Organism   Escherichia coli strain ET846     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809010..1820437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD57_RS08770 (NMD57_08720) yeeZ 1809065..1809889 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  NMD57_RS08775 (NMD57_08725) yeeY 1809935..1810864 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  NMD57_RS08780 (NMD57_08730) yoeI 1811079..1811141 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD57_RS08785 (NMD57_08735) plaP 1811131..1812489 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD57_RS08790 (NMD57_08740) tsuA 1812668..1813726 (+) 1059 WP_024195240.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD57_RS08795 (NMD57_08745) tsuB 1813740..1813967 (+) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD57_RS08800 (NMD57_08750) sbcB 1814010..1815437 (-) 1428 WP_000980611.1 exodeoxyribonuclease I Machinery gene
  NMD57_RS08805 (NMD57_08755) dacD 1815646..1816812 (+) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD57_RS08810 (NMD57_08760) sbmC 1816931..1817404 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  NMD57_RS08815 (NMD57_08765) yeeA 1817602..1818660 (+) 1059 WP_001200890.1 FUSC family protein -
  NMD57_RS08820 (NMD57_08770) tmaR 1818832..1819161 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD57_RS08825 (NMD57_08775) - 1819262..1819444 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NMD57_RS08830 (NMD57_08780) - 1819507..1819644 (+) 138 Protein_1727 transposase domain-containing protein -
  NMD57_RS08835 (NMD57_08785) - 1819933..1820025 (-) 93 Protein_1728 DUF957 domain-containing protein -
  NMD57_RS08840 (NMD57_08790) yeeW 1820059..1820253 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=606464 NMD57_RS08800 WP_000980611.1 1814010..1815437(-) (sbcB) [Escherichia coli strain ET846]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=606464 NMD57_RS08800 WP_000980611.1 1814010..1815437(-) (sbcB) [Escherichia coli strain ET846]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585