Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LA372_RS14465 Genome accession   NZ_CP083585
Coordinates   2986856..2987485 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ECNB21-M121     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2981856..2992485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA372_RS14450 (LA372_14450) helD 2982098..2984152 (-) 2055 WP_001295354.1 DNA helicase IV -
  LA372_RS14455 (LA372_14455) yccF 2984275..2984721 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LA372_RS14460 (LA372_14460) yccS 2984731..2986893 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LA372_RS14465 (LA372_14465) sxy/tfoX 2986856..2987485 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LA372_RS14470 (LA372_14470) sulA 2987704..2988213 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LA372_RS14475 (LA372_14475) ompA 2988570..2989625 (+) 1056 WP_000750414.1 porin OmpA -
  LA372_RS14480 (LA372_14480) matP 2989701..2990153 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  LA372_RS14485 (LA372_14485) ycbZ 2990339..2992099 (+) 1761 WP_000156509.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=606368 LA372_RS14465 WP_000839153.1 2986856..2987485(-) (sxy/tfoX) [Escherichia coli strain ECNB21-M121]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=606368 LA372_RS14465 WP_000839153.1 2986856..2987485(-) (sxy/tfoX) [Escherichia coli strain ECNB21-M121]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1