Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K9N56_RS19840 Genome accession   NZ_CP083580
Coordinates   3868598..3868882 (-) Length   94 a.a.
NCBI ID   WP_006639122.1    Uniprot ID   -
Organism   Bacillus sp. PM8313     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3863598..3873882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N56_RS19820 (K9N56_19820) smpB 3864437..3864910 (-) 474 WP_006639118.1 SsrA-binding protein -
  K9N56_RS19825 (K9N56_19825) rnr 3865023..3867317 (-) 2295 WP_006639119.1 ribonuclease R -
  K9N56_RS19830 (K9N56_19830) - 3867331..3868077 (-) 747 WP_006639120.1 alpha/beta hydrolase -
  K9N56_RS19835 (K9N56_19835) secG 3868208..3868438 (-) 231 WP_006639121.1 preprotein translocase subunit SecG -
  K9N56_RS19840 (K9N56_19840) abrB 3868598..3868882 (-) 285 WP_006639122.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K9N56_RS19845 (K9N56_19845) - 3868912..3869142 (-) 231 WP_006639123.1 helix-turn-helix domain-containing protein -
  K9N56_RS19850 (K9N56_19850) - 3869298..3869702 (+) 405 WP_006639124.1 helix-turn-helix domain-containing protein -
  K9N56_RS19855 (K9N56_19855) - 3869855..3870253 (+) 399 WP_029419541.1 helix-turn-helix domain-containing protein -
  K9N56_RS19860 (K9N56_19860) - 3870297..3870974 (-) 678 WP_006639126.1 ABC transporter permease -
  K9N56_RS19865 (K9N56_19865) opuCC 3870993..3871910 (-) 918 WP_006639127.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  K9N56_RS19870 (K9N56_19870) - 3871924..3872577 (-) 654 WP_006639128.1 ABC transporter permease -
  K9N56_RS19875 (K9N56_19875) - 3872594..3873736 (-) 1143 WP_006639129.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10487.30 Da        Isoelectric Point: 7.9636

>NTDB_id=606321 K9N56_RS19840 WP_006639122.1 3868598..3868882(-) (abrB) [Bacillus sp. PM8313]
MKNTGIVRRIDELGRVVLPVELRRVLNIKEKDPLEIYSDGDNIILAKYAANMACLMTGEITTQNKTYAGGKIILSPRGAE
MLLEDLLEALSNRK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=606321 K9N56_RS19840 WP_006639122.1 3868598..3868882(-) (abrB) [Bacillus sp. PM8313]
ATGAAGAATACCGGAATTGTAAGAAGAATCGATGAGCTTGGCCGGGTGGTCCTGCCGGTGGAACTGAGAAGGGTGCTGAA
TATCAAGGAAAAAGATCCGCTTGAAATTTACAGCGACGGCGACAATATCATTCTTGCCAAATATGCAGCAAACATGGCCT
GTCTGATGACCGGTGAAATCACGACACAGAACAAAACGTACGCAGGCGGCAAAATCATCCTCAGCCCGCGCGGCGCCGAA
ATGCTTTTGGAAGATTTGCTGGAGGCCTTGTCCAACAGGAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-86)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

100

0.564