Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K9N56_RS15310 Genome accession   NZ_CP083580
Coordinates   3006409..3007179 (-) Length   256 a.a.
NCBI ID   WP_006637599.1    Uniprot ID   -
Organism   Bacillus sp. PM8313     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3001409..3012179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N56_RS15290 (K9N56_15290) - 3001472..3002284 (-) 813 WP_006637595.1 pyruvate, water dikinase regulatory protein -
  K9N56_RS15295 (K9N56_15295) - 3002308..3002946 (-) 639 WP_006637596.1 helix-turn-helix transcriptional regulator -
  K9N56_RS15300 (K9N56_15300) glyS 3003153..3005192 (-) 2040 WP_006637597.1 glycine--tRNA ligase subunit beta -
  K9N56_RS15305 (K9N56_15305) glyQ 3005185..3006072 (-) 888 WP_006637598.1 glycine--tRNA ligase subunit alpha -
  K9N56_RS15310 (K9N56_15310) recO 3006409..3007179 (-) 771 WP_006637599.1 DNA repair protein RecO Machinery gene
  K9N56_RS15315 (K9N56_15315) - 3007218..3007361 (-) 144 WP_006637600.1 YqzL family protein -
  K9N56_RS15320 (K9N56_15320) era 3007522..3008427 (-) 906 WP_006637601.1 GTPase Era -
  K9N56_RS15325 (K9N56_15325) - 3008408..3009040 (-) 633 WP_255130748.1 cytidine deaminase -
  K9N56_RS15330 (K9N56_15330) - 3008958..3009338 (-) 381 WP_006637603.1 diacylglycerol kinase family protein -
  K9N56_RS15335 (K9N56_15335) ybeY 3009316..3009792 (-) 477 WP_006637604.1 rRNA maturation RNase YbeY -
  K9N56_RS15340 (K9N56_15340) - 3009789..3011879 (-) 2091 WP_051056678.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29407.16 Da        Isoelectric Point: 9.2713

>NTDB_id=606304 K9N56_RS15310 WP_006637599.1 3006409..3007179(-) (recO) [Bacillus sp. PM8313]
MLTKCEGIVLRTNDYGETNKILTILTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMLESMRN
IREDLFLTAHAAYIAELVDKGTDEKKPNPFLFELLLQSMRRLNDGTDPDIITNLIEVKMLGVIGLYPELNECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRVPMSPASARLLRLLFYFDLSRLGNVSVKRETKEELKRVIQLYYDEYSGIFLKSRRFM
EQMDNMKKMLGNENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=606304 K9N56_RS15310 WP_006637599.1 3006409..3007179(-) (recO) [Bacillus sp. PM8313]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACGAACGATTATGGTGAAACCAATAAAATTTTGACAATTTTGACAAG
GGAGCATGGGAAAATCGGTGTACTGGCAAGAGGCGCAAAAAAACCGAACAGCCGCTTGTCGGCTATTTCCCAGCCCTTTC
TCTACGCTTCGTTTTTATTTCGGAAATCGTCCGGACTCGGTACGCTTGAGCAGGGCGAAATGCTTGAAAGCATGCGGAAT
ATTCGCGAGGACCTTTTTTTAACGGCGCATGCCGCTTATATCGCCGAATTGGTTGACAAAGGCACGGATGAAAAGAAACC
GAACCCGTTTTTATTCGAACTGCTTCTTCAATCGATGAGAAGGCTGAATGACGGGACTGATCCGGACATCATTACAAACC
TGATCGAAGTCAAAATGCTCGGCGTAATCGGGCTTTATCCGGAATTAAATGAATGCGTCCATTGCAAGAGCAAAGACGGA
ACATTCCATTTTTCAATCCGCGACAACGGCTTTATATGCCATCGCTGCTTTGCGAAGGACCCTTATCGGGTGCCGATGTC
TCCCGCTTCAGCCAGGCTTTTGAGACTGCTTTTTTATTTTGACCTGTCAAGGCTCGGGAATGTATCGGTAAAACGTGAAA
CAAAGGAAGAGCTGAAAAGAGTCATCCAGCTCTATTATGACGAGTACTCGGGAATTTTTCTGAAATCGCGGCGCTTTATG
GAACAGATGGACAATATGAAAAAAATGCTCGGCAATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77