Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K9N56_RS06820 Genome accession   NZ_CP083580
Coordinates   1360792..1362612 (+) Length   606 a.a.
NCBI ID   WP_006636842.1    Uniprot ID   -
Organism   Bacillus sp. PM8313     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355792..1367612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N56_RS06790 (K9N56_06790) - 1356491..1357069 (+) 579 WP_006636837.1 GNAT family N-acetyltransferase -
  K9N56_RS06795 (K9N56_06795) spxA 1357247..1357642 (+) 396 WP_006636838.1 transcriptional regulator SpxA -
  K9N56_RS06800 (K9N56_06800) - 1357675..1358337 (-) 663 WP_006636839.1 TerC family protein -
  K9N56_RS06805 (K9N56_06805) - 1358506..1358631 (+) 126 Protein_1286 hypothetical protein -
  K9N56_RS06810 (K9N56_06810) mecA 1358613..1359251 (+) 639 WP_006636840.1 adaptor protein MecA Regulator
  K9N56_RS06815 (K9N56_06815) - 1359430..1360578 (+) 1149 WP_006636841.1 competence protein CoiA family protein -
  K9N56_RS06820 (K9N56_06820) pepF 1360792..1362612 (+) 1821 WP_006636842.1 oligoendopeptidase F Regulator
  K9N56_RS06825 (K9N56_06825) - 1362688..1362855 (-) 168 WP_006636843.1 hypothetical protein -
  K9N56_RS06830 (K9N56_06830) spxH 1363266..1364099 (-) 834 WP_373870167.1 protease adaptor protein SpxH -
  K9N56_RS06835 (K9N56_06835) - 1364156..1364554 (-) 399 WP_006636845.1 hemoglobin YjbI -
  K9N56_RS06840 (K9N56_06840) - 1364842..1365513 (-) 672 WP_006636846.1 lytic transglycosylase domain-containing protein -
  K9N56_RS06845 (K9N56_06845) - 1365526..1366098 (-) 573 WP_006636847.1 CYTH domain-containing protein -
  K9N56_RS06850 (K9N56_06850) - 1366222..1366587 (+) 366 WP_006636848.1 hypothetical protein -
  K9N56_RS06855 (K9N56_06855) - 1366618..1367253 (+) 636 WP_006636849.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69953.53 Da        Isoelectric Point: 4.8718

>NTDB_id=606285 K9N56_RS06820 WP_006636842.1 1360792..1362612(+) (pepF) [Bacillus sp. PM8313]
MAEENQTKKLPARDEVKQEDTWRLEDIFPSDEAWNEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKASNLYTQAASATAYMVPEILSIQEDKLQQFLLEKEELKLYSHALEEINKERPHVLSEQ
EEGLLAEASDVLSSPSTTFGMLNNADMEFPEITDENGEKRQITHGNYITFLESENRDVRRDAFKAVYDTYGRFKNTLAST
LSGAIKKDNFYAKVKHYQSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYGQAKDYMIKGLAPLGEEYTSILKEGLNNRWVDVYENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGDYLLNTVDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHAIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGENIEIDKEIGLEWARIPHFYYNYYVYQYATGYSAAQALSQQILKEGKPAVDRYIDFL
KAGSSDYPIEVLKKAGVDMTTSDPIEAACKKFEEQLNEMEELLLKK

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=606285 K9N56_RS06820 WP_006636842.1 1360792..1362612(+) (pepF) [Bacillus sp. PM8313]
GTGGCTGAAGAAAACCAAACGAAAAAACTGCCTGCAAGAGATGAGGTGAAGCAAGAGGACACGTGGAGACTCGAGGATAT
CTTTCCATCTGATGAAGCCTGGAATGAGGAATTTCAAGCGGTTAAAGAGCTGCTGCCTAAGCTCTCCGAATTTAAGGGAA
GGCTCGGCCATTCCGCCGACGATTTATATGAAGCATTGACATATCAGGACAAGGTCATGGAAAGGCTCGGGAAGCTGTAT
ACTTACGCTCATATGCGCTATGATCAGGATACAGGCAATTCATTTTATCAGGGTCTGAATGATAAAGCCTCCAACCTTTA
TACACAGGCTGCCAGCGCGACAGCTTATATGGTGCCGGAGATTTTATCGATACAGGAAGACAAGCTTCAGCAGTTCCTTT
TAGAAAAAGAGGAACTAAAGCTCTACTCGCATGCGCTTGAAGAAATCAACAAAGAGCGGCCCCACGTGTTGAGCGAACAG
GAAGAAGGGCTGCTCGCAGAGGCGTCAGATGTTCTGTCATCTCCGTCCACAACATTCGGCATGCTCAACAACGCCGATAT
GGAATTTCCGGAAATCACCGATGAGAACGGGGAAAAACGCCAGATCACACACGGAAACTACATCACCTTTTTGGAAAGCG
AGAACCGCGACGTCCGCCGCGACGCATTCAAAGCTGTGTATGATACGTACGGCCGCTTTAAAAACACGCTTGCATCAACG
CTCAGCGGCGCCATCAAAAAAGATAATTTTTATGCAAAGGTTAAACATTATCAATCGGCCAGGGAAGCGGCCCTGTCGCG
CAACAGCATTCCCGAAGAGGTCTATGATAATCTCGTCAGCACGATCAATAAACACCTGCCGCTTCTTCACCGCTATGTTG
AGCTCAGAAAAAAAGTGCTCGAACTTGATGAAGTGCACATGTATGACCTCTACACGCCGCTTGTAAAAGATTCCGGCATG
AAAGTGACGTACGGGCAGGCGAAAGATTACATGATCAAAGGGCTCGCTCCTTTGGGTGAAGAATATACATCCATCCTCAA
AGAGGGGTTAAACAACCGCTGGGTTGATGTATATGAGAACAAAGGAAAACGGAGCGGGGCTTATTCTTCAGGCGCATACG
GAACAAATCCGTATATTTTGATGAACTGGCAGGACAACGTTAACAACCTGTTCACGCTTGTCCATGAATTCGGCCATTCC
GTCCACAGTTATTATACGAGAAAGCATCAGCCGTATCCGTACGGGAACTACAGCATCTTTGTCGCTGAAGTGGCTTCAAC
GACAAATGAGGCCCTTCTGGGGGACTATCTGCTGAACACGGTCGATGATGAAAAACAACGCCTTTATATTTTAAACCATA
TGCTTGAAGGGTTTAAAGGGACGGTTTTCAGACAAACGATGTTTGCCGAATTTGAACATGCGATTCATGTCAAAGCCCAA
GAAGGCGAGCCGCTTACACCTGAACTTTTAACGAGCATCTATTATGATTTAAACAAAAAGTACTTCGGAGAAAATATTGA
AATTGACAAAGAAATCGGTCTTGAATGGGCGAGAATCCCTCATTTCTACTACAATTATTATGTATATCAATATGCGACAG
GCTACAGCGCCGCCCAGGCCTTGAGCCAGCAGATTTTAAAGGAAGGGAAGCCGGCGGTTGACCGCTACATCGACTTCCTG
AAAGCCGGAAGCTCTGATTACCCGATTGAAGTGCTCAAAAAAGCGGGAGTCGACATGACGACTTCAGATCCGATCGAAGC
TGCATGCAAAAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAGCTCCTGCTAAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.759

97.855

0.497