Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   K9N56_RS06230 Genome accession   NZ_CP083580
Coordinates   1233855..1234436 (+) Length   193 a.a.
NCBI ID   WP_006636726.1    Uniprot ID   M5PH60
Organism   Bacillus sp. PM8313     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228855..1239436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N56_RS06205 (K9N56_06205) - 1229174..1229295 (-) 122 Protein_1165 acetyl-CoA C-acyltransferase -
  K9N56_RS24630 - 1229363..1229869 (-) 507 WP_373870165.1 methyl-accepting chemotaxis protein -
  K9N56_RS24635 - 1230122..1230712 (-) 591 Protein_1167 protoglobin family protein -
  K9N56_RS06215 (K9N56_06215) - 1230760..1232289 (-) 1530 WP_006636723.1 FAD-dependent oxidoreductase -
  K9N56_RS06220 (K9N56_06220) - 1232424..1233281 (+) 858 WP_006636724.1 SDR family oxidoreductase -
  K9N56_RS06225 (K9N56_06225) - 1233350..1233583 (-) 234 WP_006636725.1 IDEAL domain-containing protein -
  K9N56_RS06230 (K9N56_06230) comK 1233855..1234436 (+) 582 WP_006636726.1 competence protein ComK Regulator
  K9N56_RS06235 (K9N56_06235) - 1234430..1234795 (-) 366 WP_006636727.1 hypothetical protein -
  K9N56_RS06240 (K9N56_06240) - 1235026..1235634 (+) 609 WP_006636728.1 TVP38/TMEM64 family protein -
  K9N56_RS06245 (K9N56_06245) lepB 1235647..1236162 (+) 516 WP_006636729.1 signal peptidase I -
  K9N56_RS06250 (K9N56_06250) - 1236319..1238080 (-) 1762 Protein_1175 S8 family serine peptidase -
  K9N56_RS06255 (K9N56_06255) - 1238659..1238886 (+) 228 WP_123032305.1 JAB domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22585.72 Da        Isoelectric Point: 9.4506

>NTDB_id=606277 K9N56_RS06230 WP_006636726.1 1233855..1234436(+) (comK) [Bacillus sp. PM8313]
MSNTEDMTRDSYEVNSSTMAVLPLDEGKKPASKVIETDRTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPP
IMVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFRAAKYDNTFVTFVNGESLELPVSISSFENQVYRTAWLRTKFLDRIEG
SAVQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=606277 K9N56_RS06230 WP_006636726.1 1233855..1234436(+) (comK) [Bacillus sp. PM8313]
ATGAGCAATACCGAAGATATGACAAGAGATTCTTATGAAGTAAACAGTTCGACAATGGCCGTGCTGCCTCTTGATGAGGG
GAAAAAGCCCGCTTCAAAAGTAATTGAAACCGACAGGACATTTCGGGTCAATATGAGGCCCTTCCAAATTATAGAGAGAA
GCTGCCGCTATTTCGGCTCAAGCTATGCGGGAAGAAAAGCCGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCG
ATCATGGTGGATCATTCAAACAATATTTTTCTTTTTCCCACATTCTCCTCAACAAGGCCTCAATGCGGGTGGCTTTCACA
TGCGCACGTTCATGAATTCCGTGCGGCAAAGTATGACAACACATTCGTCACGTTTGTAAATGGCGAATCTTTGGAGCTGC
CGGTTTCCATCTCATCTTTTGAAAATCAGGTTTACCGCACGGCATGGCTGAGAACCAAGTTTCTCGATCGGATTGAAGGA
AGCGCCGTGCAGAAAAAACAGGAATTTATGCTGTATCCAAAGGAAGACCGGAACCAGCTGATATATGAATTCATCCTCAG
GGAGCTGAAAAAACGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

67.876

100

0.679