Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABEDC_RS14405 Genome accession   NZ_CP083571
Coordinates   2988339..2988665 (-) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983339..2993665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS14385 (ABEDC_2993) - 2983537..2984196 (-) 660 WP_374952289.1 FHA domain-containing protein -
  ABEDC_RS14390 (ABEDC_2994) gspD 2984259..2986520 (-) 2262 WP_071852111.1 type II secretion system secretin GspD -
  ABEDC_RS14395 (ABEDC_2995) - 2986559..2987413 (-) 855 WP_004729294.1 type II secretion system protein N -
  ABEDC_RS14400 (ABEDC_2996) gspN 2987413..2988156 (-) 744 WP_374952290.1 type II secretion system protein N -
  ABEDC_RS14405 (ABEDC_2997) hns 2988339..2988665 (-) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABEDC_RS14410 (ABEDC_2998) - 2988807..2989235 (-) 429 WP_253100001.1 thioesterase family protein -
  ABEDC_RS14415 (ABEDC_2999) - 2989244..2990437 (-) 1194 WP_374952291.1 heme biosynthesis protein HemY -
  ABEDC_RS14420 (ABEDC_3000) - 2990444..2991283 (-) 840 WP_374952292.1 hypothetical protein -
  ABEDC_RS14425 (ABEDC_3001) - 2991280..2992059 (-) 780 WP_374952293.1 uroporphyrinogen-III synthase -
  ABEDC_RS14430 (ABEDC_3002) hemC 2992059..2992982 (-) 924 WP_374952294.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=606247 ABEDC_RS14405 WP_026055760.1 2988339..2988665(-) (hns) [Acinetobacter lwoffii strain ED9-5a]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=606247 ABEDC_RS14405 WP_026055760.1 2988339..2988665(-) (hns) [Acinetobacter lwoffii strain ED9-5a]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAATCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGATGCTTATCAGCAAATCTTGGCAGTTGCCGAGAAAGTTGGTATGACGGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAGCGTAAGAAATCATCACGTAAGTCGGTTGAGCCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787