Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABEDC_RS14100 Genome accession   NZ_CP083571
Coordinates   2915187..2917409 (+) Length   740 a.a.
NCBI ID   WP_262458214.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2910187..2922409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS14080 (ABEDC_2930) lnt 2910984..2912543 (+) 1560 WP_262458216.1 apolipoprotein N-acyltransferase -
  ABEDC_RS14085 (ABEDC_2931) - 2912697..2913032 (-) 336 WP_262458215.1 hypothetical protein -
  ABEDC_RS14090 (ABEDC_2932) gspG 2913317..2913751 (-) 435 WP_004278567.1 type II secretion system major pseudopilin GspG -
  ABEDC_RS14095 (ABEDC_2933) gspF 2913831..2915036 (-) 1206 WP_004278568.1 type II secretion system inner membrane protein GspF -
  ABEDC_RS14100 (ABEDC_2934) priA 2915187..2917409 (+) 2223 WP_262458214.1 primosomal protein N' Machinery gene
  ABEDC_RS14105 (ABEDC_2935) - 2917485..2919338 (+) 1854 WP_374952275.1 cation:proton antiporter -
  ABEDC_RS14110 (ABEDC_2936) - 2919389..2920264 (+) 876 WP_004278571.1 Hsp33 family molecular chaperone HslO -
  ABEDC_RS14115 (ABEDC_2937) - 2920586..2921047 (+) 462 WP_005102907.1 DUF2147 domain-containing protein -
  ABEDC_RS14120 (ABEDC_2938) - 2921532..2921861 (+) 330 WP_004278573.1 chaperone modulator CbpM -
  ABEDC_RS14125 (ABEDC_2939) - 2921951..2922208 (+) 258 WP_004278574.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84187.17 Da        Isoelectric Point: 8.5527

>NTDB_id=606246 ABEDC_RS14100 WP_262458214.1 2915187..2917409(+) (priA) [Acinetobacter lwoffii strain ED9-5a]
MQNSHTDLSPIYRVRVAVPVHVFDCFDYTMSAEQFKQAQIGARVLVSFGRQNLVGVIIEKLSADTPLDPRFKLKAVTELL
DERAIIDSKVLSLLTWSAQYYQFPIGEVIHSALPTLLRQGKPYNLLARTWKLLDPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFSPQPVQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYALVEHGKMQALELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELVTLGMGTGKVEEHLNELFPDFDVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQMARM
PPYRYAILIRCESKDQSQNTEFLQKHAALLRQYPDLELDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=606246 ABEDC_RS14100 WP_262458214.1 2915187..2917409(+) (priA) [Acinetobacter lwoffii strain ED9-5a]
ATGCAAAATTCTCACACCGATTTAAGTCCAATTTATCGCGTACGCGTTGCTGTACCTGTGCATGTATTTGATTGTTTTGA
TTACACGATGAGTGCAGAACAATTTAAACAGGCGCAGATTGGCGCACGTGTACTGGTGTCGTTTGGTCGGCAGAATCTGG
TCGGGGTGATTATCGAAAAACTCTCGGCAGACACTCCTCTCGATCCGCGGTTTAAACTTAAGGCTGTGACCGAACTACTC
GATGAACGCGCCATTATAGATAGCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAGTATTATCAGTTTCCGATCGGTGA
AGTCATCCACAGTGCCCTGCCGACCCTGCTGCGTCAGGGCAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTGCTGG
ACCCTGATGCCGAGGCCAAAGTACGCCGTTCGGACAAGCAGCAGGAAGCCTACCGGATTTTAAAACTGCATCCGGTCGGG
ACTACTGAAAATGTGCTGAATATGGCCGGGATTGAAACCGCGACCTTAAAAGCACTGGAGAAAAAAGAGATTTGCGCCTG
TGTACTGGAGCCACAAGATTTCAGTCCACAGCCAGTGCAATTGGCACAGATGCCGCTGACCGCCAATCCTGAACAAAAAC
ATGCAGTCGAACAGGTATTAAAATATCGCAATCAATATCAAGCTTTTTTACTGGATGGTCTGACCGGTAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTAAAACAGGGCAAACAGGTGCTGGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGTTGCTGCACTCCGGTTTGAATGATTCCAAAC
GGCTACAGGCCTGGCAGTCGGCAGAAACTGGCAAAGCCTCGATTGTGCTTGGGACACGTTCCGCCATTTATACGCCAATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCCCG
TGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCGGTAATCTTAGGGTCAGCCACACCAAGCATTGACAGTTATG
CGCTGGTTGAACATGGCAAGATGCAGGCACTGGAGCTGAACCAGCGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTGCAATTGATTCAGGACATCAAAAAGCGCCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCTCCCGTCCTGCTGTGTGGCAGCTGTGGTTGGCAGGCGCAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGTCAGCCTTATCAGCATCTGCATTGCCATCACTGCGGCACTATTCAC
CGCATGCCGGAACACTGCCCGCAATGTCAGCATCAGGAACTGGTTACACTGGGTATGGGCACCGGCAAAGTCGAAGAACA
TCTGAATGAACTCTTTCCGGATTTTGATGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTTGGCAGCTGGCAAAAAA
TTTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTCGGCACCCAGATGCTGGCCAAGGGACACCATTTTCCTTAT
GTGACGCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCTACTGAACGGACTGCACAACT
GATTGTGCAGGTGGCAGGCCGCGCAGGCCGTGGTGAACATAAGGGTGATGTCTATCTGCAAACGCTCAGACCAGATCATG
CCCTACTGAATACCCTGGTCAATGAAAATTATCGCGTATTTGCCCAGCAAACCTTAAAAGAACGGCAGATGGCCAGAATG
CCGCCCTATCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGTCACAAAATACCGAATTCTTACAGAAACATGC
AGCACTCCTCAGGCAATATCCTGATCTGGAGCTGGACATCTGGGGACCGATTCCTGCGCCAATGGAACGCAAGGCGGGGC
GCTATCAGTCGCATATGGTGCTATTGTCAGCGGATCGTCCACGTTTGCATTACTATGTGCGTAGCTGGTGGCAAAACATG
CTGCAGGACAAACCTTCTAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.526

99.189

0.709