Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABEDC_RS02360 Genome accession   NZ_CP083571
Coordinates   479815..480672 (+) Length   285 a.a.
NCBI ID   WP_171066348.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474815..485672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS02335 (ABEDC_0484) - 475101..476306 (+) 1206 Protein_443 CsgG/HfaB family protein -
  ABEDC_RS02340 (ABEDC_0486) - 476391..477065 (+) 675 WP_114542091.1 hypothetical protein -
  ABEDC_RS02345 (ABEDC_0487) - 477328..477903 (-) 576 WP_005094083.1 xanthine phosphoribosyltransferase -
  ABEDC_RS02350 (ABEDC_0488) - 477992..478705 (-) 714 WP_071850839.1 DUF3108 domain-containing protein -
  ABEDC_RS02355 (ABEDC_0489) - 478865..479551 (-) 687 WP_148335008.1 hypothetical protein -
  ABEDC_RS02360 (ABEDC_0490) tonB2 479815..480672 (+) 858 WP_171066348.1 energy transducer TonB Machinery gene
  ABEDC_RS02365 (ABEDC_0491) ybeY 480856..481338 (-) 483 WP_005249939.1 rRNA maturation RNase YbeY -
  ABEDC_RS02370 (ABEDC_0492) - 481361..482437 (-) 1077 WP_004732214.1 PhoH family protein -
  ABEDC_RS02375 (ABEDC_0493) miaB 482475..483932 (-) 1458 WP_005265592.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32691.05 Da        Isoelectric Point: 5.7562

>NTDB_id=606229 ABEDC_RS02360 WP_171066348.1 479815..480672(+) (tonB2) [Acinetobacter lwoffii strain ED9-5a]
MPLVRTWWKDPVFSSALLAAGILHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQHAGEELQESLDMLQQQQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=606229 ABEDC_RS02360 WP_171066348.1 479815..480672(+) (tonB2) [Acinetobacter lwoffii strain ED9-5a]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGTTGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTGACACTGGAATTTGGTATGCCGCAAGATCGGGATACCAGTACCAAAGAAATCGCGGTCAGCTTGCGCCAAACTGATG
AAAAAATTGAGCATGCTGATTTTCTGGCCCAAACGGACCAGCAGGGTTCCGGCCAGTTTAGAGAAGCTCATCGCATGTCG
AGTGATATGCCATCGCCGTTAATGGAGCAACATGCAGGCGAAGAACTGCAAGAAAGTCTGGATATGCTGCAACAGCAACA
GGAACTCAGTTTTGAAGAAAAAGTCCTGATGACCACCTTGAGCTGGCAAAAGCAGGCGGAAGAAAATCAGCGTAAAAAAA
TGCAGGAGCAATTACAGAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTCAGTCGTCAGCAAAAAATTAAGACTGTAGATGGGATTCAGTCCAAGCAGGATGTTTCGGCCGCCTATCTGGA
AAAGTTCCGTGAAAAAGTGGAATTTTATGGCAACCGCTACTATCCGGAAGCAGCCAAGCAGCAGAATCTGGCAGGTGAAG
TGCGTTTGATGGTGATCCTGAATCAGAATGGGGGGATTCGTGCCATTCGACTGATTGACAGTTCAGGACATGCCATGTTG
GATGAAGCAGCTAAATCCTCCGTGCGTAAGGCAGCACCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAACT
GCGAGTGATTCGTACCTGGCGTTTTGACCCGGCAGAAGCGGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716