Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEDC_RS00880 Genome accession   NZ_CP083571
Coordinates   188252..189406 (-) Length   384 a.a.
NCBI ID   WP_138742548.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183252..194406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS00855 (ABEDC_0176) - 183444..184043 (-) 600 WP_311204255.1 hypothetical protein -
  ABEDC_RS00860 (ABEDC_0177) - 184367..184912 (-) 546 WP_195725446.1 glutathione peroxidase -
  ABEDC_RS00865 (ABEDC_0178) - 185104..186000 (+) 897 WP_253114787.1 DMT family transporter -
  ABEDC_RS00870 (ABEDC_0179) - 186445..187014 (-) 570 WP_374952399.1 L-threonylcarbamoyladenylate synthase -
  ABEDC_RS00875 (ABEDC_0180) dprA 187056..188195 (-) 1140 WP_374952400.1 DNA-processing protein DprA Machinery gene
  ABEDC_RS00880 (ABEDC_0181) tsaP 188252..189406 (-) 1155 WP_138742548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEDC_RS00885 (ABEDC_0182) def 189527..190057 (+) 531 WP_004644875.1 peptide deformylase -
  ABEDC_RS00890 (ABEDC_0183) - 190150..190560 (+) 411 WP_222112365.1 DUF2946 family protein -
  ABEDC_RS00895 (ABEDC_0184) - 190633..192663 (+) 2031 WP_374952401.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42146.39 Da        Isoelectric Point: 9.0687

>NTDB_id=606215 ABEDC_RS00880 WP_138742548.1 188252..189406(-) (tsaP) [Acinetobacter lwoffii strain ED9-5a]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKNFDQLSYAYVLESELPIKVGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=606215 ABEDC_RS00880 WP_138742548.1 188252..189406(-) (tsaP) [Acinetobacter lwoffii strain ED9-5a]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCAGTTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCTAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTCCGTTGG
CCGGAAATCTGGGCCAGTAATAAGCACGTGAAAAATCCACATTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCAGTGATTCCGCTTGAGCATATCAAGCAGTGGTTGGAA
CGCTATACCCTTCTGGCGCCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGTAGTGGGTCAACGCTATGCCGTTTATCGTGAAGCTGAACCGT
ATGTATTTACGGATGCAAACGGCAAGAAATATACGGCTGCACTTGAGCTGCAACAGGTGGCATCTGGTATTGCAGTTCGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCGGTGATCGTGTCTTACCAGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGCCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTTGTCACCATTGACCGTGGTACGGCACATGGAGTTCAGACGGGTCAT
GTCTTTAGTGTGAATCAAAAAGGTGAAGTGGTCACTGATCCTAAAACTAAAGAACGTGTGCAATTGCCAGGTGAGCGTAT
TGGCCAAATCATGGTATTCAAAAACTTCGATCAATTAAGCTATGCCTATGTGCTAGAGAGCGAATTACCAATCAAGGTTG
GTGCAGGAATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.792

100

0.68