Detailed information NTG0606172

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD61_RS22685
• Genome accession: NZ_CP100876
• Coordinates: 4597928..4598953 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET979
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4592928..4603953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD61_RS22665 (NMD61_22520)	metJ	4593989..4594306 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD61_RS22670 (NMD61_22525)	yiiX	4594490..4595098 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD61_RS22675 (NMD61_22530)	rpmE	4595159..4595371 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD61_RS22680 (NMD61_22535)	priA	4595574..4597772 (+)	2199	WP_001424430.1	primosomal protein N'	Machinery gene
NMD61_RS22685 (NMD61_22540)	cytR	4597928..4598953 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD61_RS22690 (NMD61_22545)	ftsN	4599045..4600004 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD61_RS22695 (NMD61_22550)	hslV	4600097..4600627 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD61_RS22700 (NMD61_22555)	hslU	4600637..4601968 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD61_RS22705 (NMD61_22560)	menA	4602035..4602961 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD61_RS22710 (NMD61_22565)	rraA	4603054..4603539 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD61_RS22715 (NMD61_22570)	zapB	4603624..4603869 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=606172 NMD61_RS22685 WP_000644904.1 4597928..4598953(+) (cytR) [Escherichia coli strain ET979]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=606172 NMD61_RS22685 WP_000644904.1 4597928..4598953(+) (cytR) [Escherichia coli strain ET979]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628