Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMD61_RS17950 Genome accession   NZ_CP100876
Coordinates   3620693..3621298 (-) Length   201 a.a.
NCBI ID   WP_097757136.1    Uniprot ID   -
Organism   Escherichia coli strain ET979     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3615693..3626298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD61_RS17930 (NMD61_17810) aes 3615730..3616689 (+) 960 WP_000801849.1 acetyl esterase -
  NMD61_RS17935 (NMD61_17815) hemH 3616686..3617648 (-) 963 WP_001250117.1 ferrochelatase -
  NMD61_RS17940 (NMD61_17820) adk 3617884..3618528 (-) 645 WP_001220233.1 adenylate kinase -
  NMD61_RS17945 (NMD61_17825) htpG 3618709..3620583 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NMD61_RS17950 (NMD61_17830) recR 3620693..3621298 (-) 606 WP_097757136.1 recombination mediator RecR Machinery gene
  NMD61_RS17955 (NMD61_17835) ybaB 3621298..3621627 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NMD61_RS17960 (NMD61_17840) dnaX 3621680..3623611 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NMD61_RS17965 (NMD61_17845) apt 3623740..3624291 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NMD61_RS17970 (NMD61_17850) ybaN 3624444..3624821 (-) 378 WP_001188905.1 DUF454 family protein -
  NMD61_RS17975 (NMD61_17855) priC 3624891..3625418 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NMD61_RS17980 (NMD61_17860) rsmS 3625432..3625593 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21948.03 Da        Isoelectric Point: 4.9097

>NTDB_id=606157 NMD61_RS17950 WP_097757136.1 3620693..3621298(-) (recR) [Escherichia coli strain ET979]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIELTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=606157 NMD61_RS17950 WP_097757136.1 3620693..3621298(-) (recR) [Escherichia coli strain ET979]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCTGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443