Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD61_RS09345 Genome accession   NZ_CP100876
Coordinates   1944008..1945432 (-) Length   474 a.a.
NCBI ID   WP_089587734.1    Uniprot ID   -
Organism   Escherichia coli strain ET979     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939008..1950432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD61_RS09315 (NMD61_09260) yeeZ 1939063..1939887 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD61_RS09320 (NMD61_09265) yeeY 1939933..1940862 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  NMD61_RS09325 (NMD61_09270) yoeI 1941077..1941139 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD61_RS09330 (NMD61_09275) plaP 1941129..1942487 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD61_RS09335 (NMD61_09280) tsuA 1942666..1943724 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD61_RS09340 (NMD61_09285) tsuB 1943738..1943965 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD61_RS09345 (NMD61_09290) sbcB 1944008..1945432 (-) 1425 WP_089587734.1 exodeoxyribonuclease I Machinery gene
  NMD61_RS09350 (NMD61_09295) - 1945614..1946792 (+) 1179 WP_089587735.1 site-specific integrase -
  NMD61_RS09355 (NMD61_09300) - 1946773..1946984 (-) 212 Protein_1832 helix-turn-helix transcriptional regulator -
  NMD61_RS09360 (NMD61_09305) - 1947064..1947408 (-) 345 WP_001281193.1 hypothetical protein -
  NMD61_RS09365 (NMD61_09310) - 1947436..1947603 (-) 168 WP_000545723.1 hypothetical protein -
  NMD61_RS09370 (NMD61_09315) - 1947676..1947960 (-) 285 WP_021538749.1 ASCH domain-containing protein -
  NMD61_RS09375 (NMD61_09320) - 1948005..1948169 (+) 165 Protein_1836 glycoside hydrolase family protein -
  NMD61_RS09380 (NMD61_09325) - 1948166..1948603 (+) 438 WP_089587737.1 lysis protein -
  NMD61_RS09385 (NMD61_09330) - 1948806..1949348 (+) 543 WP_004015017.1 Rha family transcriptional regulator -
  NMD61_RS09390 (NMD61_09335) - 1949576..1949818 (+) 243 WP_000807788.1 DUF2560 family protein -
  NMD61_RS09395 (NMD61_09340) - 1949894..1950130 (-) 237 WP_001673925.1 hypothetical protein -
  NMD61_RS09400 (NMD61_09345) - 1950178..1950360 (-) 183 WP_000997154.1 YodC family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54353.62 Da        Isoelectric Point: 5.3476

>NTDB_id=606137 NMD61_RS09345 WP_089587734.1 1944008..1945432(-) (sbcB) [Escherichia coli strain ET979]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYVDDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=606137 NMD61_RS09345 WP_089587734.1 1944008..1945432(-) (sbcB) [Escherichia coli strain ET979]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
TCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586