Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K9U09_RS06005 Genome accession   NZ_CP083497
Coordinates   1195474..1196103 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain elppa6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190474..1201103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U09_RS05990 (K9U09_06000) helD 1190716..1192770 (-) 2055 WP_001315388.1 DNA helicase IV -
  K9U09_RS05995 (K9U09_06005) yccF 1192893..1193339 (+) 447 WP_001261235.1 YccF domain-containing protein -
  K9U09_RS06000 (K9U09_06010) yccS 1193349..1195511 (+) 2163 WP_000875044.1 YccS family putative transporter -
  K9U09_RS06005 (K9U09_06015) sxy/tfoX 1195474..1196103 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K9U09_RS06010 (K9U09_06020) sulA 1196322..1196831 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K9U09_RS06015 (K9U09_06025) ompA 1197188..1198240 (+) 1053 WP_000750419.1 porin OmpA -
  K9U09_RS06020 (K9U09_06030) matP 1198315..1198767 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  K9U09_RS06025 (K9U09_06035) ycbZ 1198953..1200713 (+) 1761 WP_163332137.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=606117 K9U09_RS06005 WP_000839153.1 1195474..1196103(-) (sxy/tfoX) [Escherichia coli strain elppa6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=606117 K9U09_RS06005 WP_000839153.1 1195474..1196103(-) (sxy/tfoX) [Escherichia coli strain elppa6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1