Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K9U12_RS06895 Genome accession   NZ_CP083481
Coordinates   1337257..1337886 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain elppa9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1332257..1342886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U12_RS06880 (K9U12_06885) helD 1332499..1334553 (-) 2055 WP_020232990.1 DNA helicase IV -
  K9U12_RS06885 (K9U12_06890) yccF 1334676..1335122 (+) 447 WP_001261235.1 YccF domain-containing protein -
  K9U12_RS06890 (K9U12_06895) yccS 1335132..1337294 (+) 2163 WP_000875041.1 YccS family putative transporter -
  K9U12_RS06895 (K9U12_06900) sxy/tfoX 1337257..1337886 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K9U12_RS06900 (K9U12_06905) sulA 1338105..1338614 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K9U12_RS06905 (K9U12_06910) ompA 1338971..1340023 (+) 1053 WP_000750418.1 porin OmpA -
  K9U12_RS06910 (K9U12_06915) matP 1340098..1340550 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K9U12_RS06915 (K9U12_06920) ycbZ 1340736..1342496 (+) 1761 WP_029701764.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=606095 K9U12_RS06895 WP_000839153.1 1337257..1337886(-) (sxy/tfoX) [Escherichia coli strain elppa9]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=606095 K9U12_RS06895 WP_000839153.1 1337257..1337886(-) (sxy/tfoX) [Escherichia coli strain elppa9]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1