Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K9U13_RS19045 Genome accession   NZ_CP083478
Coordinates   3952329..3952958 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain elppa10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3947329..3957958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U13_RS19030 (K9U13_19045) helD 3947571..3949625 (-) 2055 WP_001315388.1 DNA helicase IV -
  K9U13_RS19035 (K9U13_19050) yccF 3949748..3950194 (+) 447 WP_001261235.1 YccF domain-containing protein -
  K9U13_RS19040 (K9U13_19055) yccS 3950204..3952366 (+) 2163 WP_000875044.1 YccS family putative transporter -
  K9U13_RS19045 (K9U13_19060) sxy/tfoX 3952329..3952958 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K9U13_RS19050 (K9U13_19065) sulA 3953177..3953686 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K9U13_RS19055 (K9U13_19070) ompA 3954043..3955095 (+) 1053 WP_000750419.1 porin OmpA -
  K9U13_RS19060 (K9U13_19075) matP 3955170..3955622 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  K9U13_RS19065 (K9U13_19080) ycbZ 3955808..3957568 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=606089 K9U13_RS19045 WP_000839153.1 3952329..3952958(-) (sxy/tfoX) [Escherichia coli strain elppa10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=606089 K9U13_RS19045 WP_000839153.1 3952329..3952958(-) (sxy/tfoX) [Escherichia coli strain elppa10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1