Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   NLL86_RS19230 Genome accession   NZ_CP100660
Coordinates   4173644..4174252 (+) Length   202 a.a.
NCBI ID   WP_254480800.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4168644..4179252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS19215 (NLL86_19215) nagZ 4171138..4172136 (-) 999 WP_254485600.1 beta-N-acetylhexosaminidase -
  NLL86_RS19220 (NLL86_19220) - 4172159..4172683 (-) 525 WP_254480798.1 L,D-transpeptidase -
  NLL86_RS19225 (NLL86_19225) - 4172724..4173431 (-) 708 WP_254480799.1 TetR/AcrR family transcriptional regulator -
  NLL86_RS19230 (NLL86_19230) dinR/lexA 4173644..4174252 (+) 609 WP_254480800.1 transcriptional repressor LexA Regulator
  NLL86_RS19235 (NLL86_19235) sulA 4174266..4174742 (+) 477 WP_254480801.1 SOS-induced cell division inhibitor SulA -
  NLL86_RS19240 (NLL86_19240) - 4174782..4175015 (-) 234 WP_054883489.1 hypothetical protein -
  NLL86_RS19245 (NLL86_19245) - 4175066..4175581 (-) 516 WP_254480802.1 DUF6586 family protein -
  NLL86_RS19250 (NLL86_19250) topA 4175708..4178320 (-) 2613 WP_254480803.1 type I DNA topoisomerase -
  NLL86_RS19255 (NLL86_19255) - 4178421..4178672 (-) 252 WP_054883486.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22280.80 Da        Isoelectric Point: 6.6433

>NTDB_id=606069 NLL86_RS19230 WP_254480800.1 4173644..4174252(+) (dinR/lexA) [Pseudomonas fluorescens strain ZL22]
MLKLTPRQAEILAFIKRCLEDNGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKAEENGL
PIIGRVAAGAPILAEQHIEQSCYINPTFFHPPADYLLRVHGMSMKDIGILDGDLLAVHTCREARNGQIVVARIGDEVTVK
RFKREGSRVWLIAENPEFAPIEVDLKEQELVIEGLSVGVIRR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=606069 NLL86_RS19230 WP_254480800.1 4173644..4174252(+) (dinR/lexA) [Pseudomonas fluorescens strain ZL22]
ATGTTGAAACTGACGCCACGCCAAGCCGAGATTCTGGCCTTCATCAAACGCTGCCTCGAAGACAACGGCTTCCCACCCAC
GCGTGCGGAAATCGCTCAGGAGCTGGGCTTCAAGTCGCCGAATGCCGCCGAGGAGCACCTCAAGGCCCTCGCCCGCAAAG
GCGCGATCGAAATGACCCCGGGCGCTTCCCGCGGCATCCGTATCCCGGGGTTTGAGGCCAAGGCCGAAGAAAACGGCTTG
CCAATCATTGGCCGGGTCGCTGCTGGCGCTCCTATCCTCGCCGAGCAGCACATCGAGCAATCCTGCTACATCAACCCGAC
CTTCTTCCACCCCCCTGCCGACTATTTGTTGCGCGTGCACGGCATGAGCATGAAGGACATCGGCATCTTAGACGGCGATC
TGCTGGCGGTGCACACCTGCCGCGAGGCCCGTAATGGCCAGATCGTCGTCGCCCGCATCGGCGACGAAGTGACCGTCAAG
CGCTTCAAGCGCGAAGGCAGCAGGGTCTGGCTCATCGCCGAAAACCCCGAATTCGCCCCTATCGAAGTCGACCTGAAAGA
GCAGGAACTGGTGATCGAGGGTTTGAGTGTCGGCGTCATTCGCCGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(81-194)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.647

100

0.396