Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NLL86_RS01525 Genome accession   NZ_CP100660
Coordinates   349733..351250 (+) Length   505 a.a.
NCBI ID   WP_254482647.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344733..356250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS01510 (NLL86_01510) rsmD 346066..346668 (-) 603 WP_254482643.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NLL86_RS01515 (NLL86_01515) - 346668..348152 (-) 1485 WP_254482645.1 pitrilysin family protein -
  NLL86_RS01520 (NLL86_01520) - 348145..349500 (-) 1356 WP_254482646.1 pitrilysin family protein -
  NLL86_RS01525 (NLL86_01525) pilA 349733..351250 (+) 1518 WP_254482647.1 signal recognition particle-docking protein FtsY Machinery gene
  NLL86_RS01530 (NLL86_01530) ftsE 351253..351924 (+) 672 WP_134691327.1 cell division ATP-binding protein FtsE -
  NLL86_RS01535 (NLL86_01535) ftsX 351921..352949 (+) 1029 WP_254482648.1 permease-like cell division protein FtsX -
  NLL86_RS01540 (NLL86_01540) rpoH 353061..353915 (+) 855 WP_054884203.1 RNA polymerase sigma factor RpoH -
  NLL86_RS01545 (NLL86_01545) mtgA 353977..354687 (-) 711 WP_176508218.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  NLL86_RS01550 (NLL86_01550) - 354752..355123 (+) 372 WP_254482649.1 DUF423 domain-containing protein -
  NLL86_RS01555 (NLL86_01555) thiS 355226..355426 (+) 201 WP_099814494.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53422.57 Da        Isoelectric Point: 4.8853

>NTDB_id=606017 NLL86_RS01525 WP_254482647.1 349733..351250(+) (pilA) [Pseudomonas fluorescens strain ZL22]
MFGSNDDKKAPAEAGEKKGLFSWFRKKPQQPVAEQPQTPEPPAPEVQPAEPVTPQPAAEQPRVEVQPPAPVEPMAPVVEA
PAPEPVASTPVVAPEPEPVASEPLVAPVPEPIASMPVHAAPVETAPVVEHAAPVSNLVLPVAEEPVALVPDLQPKAPPVI
PERPAPEPVVVAPVVAPAPVEPQPSPEVAAPVATEHSKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIET
RLLTADVGVEATSAIVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKTTTIGK
LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDN
LMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAKYFHQSVELTGLALTKLDGTAKGGVIFALAKQFKLPIRFIG
VGEGIDDLRTFEAEPFVKALFAERD

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=606017 NLL86_RS01525 WP_254482647.1 349733..351250(+) (pilA) [Pseudomonas fluorescens strain ZL22]
ATGTTTGGTTCCAACGACGACAAAAAAGCGCCGGCCGAGGCTGGCGAGAAAAAAGGCCTGTTCAGCTGGTTTCGCAAGAA
ACCGCAGCAACCTGTCGCCGAACAGCCTCAAACGCCTGAGCCACCCGCGCCCGAGGTGCAGCCAGCCGAGCCGGTAACGC
CGCAGCCCGCCGCCGAGCAGCCGCGTGTCGAAGTACAGCCGCCTGCGCCGGTCGAGCCCATGGCTCCGGTGGTCGAAGCG
CCTGCGCCAGAGCCAGTCGCTTCCACGCCAGTAGTGGCCCCCGAGCCTGAACCGGTCGCTTCCGAGCCGCTGGTCGCTCC
GGTGCCCGAGCCAATCGCTTCCATGCCTGTACACGCAGCGCCGGTCGAGACTGCTCCGGTGGTCGAGCACGCAGCCCCAG
TCAGCAACCTGGTGCTGCCGGTAGCCGAAGAGCCTGTGGCGCTGGTGCCGGACCTGCAGCCGAAGGCGCCGCCGGTGATT
CCGGAGCGTCCCGCACCAGAACCGGTGGTCGTGGCGCCAGTCGTGGCCCCTGCGCCTGTGGAGCCGCAACCCTCTCCCGA
GGTGGCTGCCCCGGTCGCCACCGAGCACTCCAAGCCCGGTTTCTTCGCCCGCCTCAAGCAGGGCCTGTCGAAGACCAGCG
CCAGCATCGGCGAGGGCATGGCCAGCCTGTTCCTGGGCAAGAAGGTCATCGATGACGACCTGCTCGACGAGATCGAAACC
CGTCTGCTCACTGCCGACGTCGGCGTCGAAGCCACCTCGGCCATCGTTCAGAACCTGACCCAGAAGGTCGCCCGCAAGCA
GCTGGCCGACGCCGACGCGCTGTACAAGTCGCTGCAGGAGGAGCTGGCAGCCCTGCTGCGCCCTGTCGAGCAGCCGCTCA
AGGTTCAGGCGCAGAACAAGCCCTATGTGATTCTGGTTGTCGGCGTGAACGGTGCCGGCAAGACCACCACCATCGGCAAA
CTGGCCAAGAAGCTGCAGCTGGAAGGCAAGAAGGTCATGCTGGCTGCCGGTGATACCTTCCGTGCCGCTGCCGTGGAGCA
ATTGCAAGTCTGGGGCGAGCGTAACCAGATCCCGGTGATTGCCCAGCACACCGGCGCCGATTCCGCCTCGGTGATCTTCG
ACGCGGTACAGGCTGCCAAAGCCCGTGGTATCGATGTGCTGATCGCCGACACCGCTGGCCGGCTGCACACCAAAGACAAC
CTGATGGAGGAGCTCAAGAAGGTCCGCCGGGTCATCGGCAAGCTCGACGCCGAGGCACCCCACGAGGTGCTGTTGGTGCT
CGACGCCGGTACCGGGCAGAACGCCATCAGCCAGGCCAAGTACTTCCATCAGAGCGTCGAGCTGACCGGCCTGGCGCTGA
CCAAGCTGGATGGCACTGCCAAAGGTGGGGTGATCTTCGCCCTGGCCAAGCAGTTCAAGCTGCCGATCCGCTTCATCGGG
GTCGGTGAGGGCATCGACGACCTGCGTACCTTCGAAGCCGAGCCGTTCGTCAAGGCTCTGTTCGCCGAGCGAGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(217-282)

SRP54-type protein, GTPase domain (SRP54)

(302-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.946

95.446

0.41