Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LAJ19_RS03625 Genome accession   NZ_CP083455
Coordinates   757496..758716 (-) Length   406 a.a.
NCBI ID   WP_225476946.1    Uniprot ID   -
Organism   Deinococcus taeanensis strain TS293     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 746461..759979 757496..758716 within 0
IS/Tn 756390..757238 757496..758716 flank 258


Gene organization within MGE regions


Location: 746461..759979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ19_RS03585 (LAJ19_03585) - 746461..747245 (-) 785 Protein_694 IS982 family transposase -
  LAJ19_RS03590 (LAJ19_03590) - 747801..748394 (-) 594 WP_225476940.1 chemotaxis protein CheB -
  LAJ19_RS03595 (LAJ19_03595) - 749478..749645 (+) 168 WP_225476941.1 hypothetical protein -
  LAJ19_RS03600 (LAJ19_03600) - 749807..750625 (-) 819 WP_225476942.1 hypothetical protein -
  LAJ19_RS03605 (LAJ19_03605) acnA 750795..753506 (+) 2712 WP_225476943.1 aconitate hydratase AcnA -
  LAJ19_RS03610 (LAJ19_03610) - 753625..753957 (+) 333 WP_225476944.1 HNH endonuclease -
  LAJ19_RS03615 (LAJ19_03615) - 754815..756140 (+) 1326 WP_225476945.1 S8 family serine peptidase -
  LAJ19_RS03620 (LAJ19_03620) - 756147..757238 (-) 1092 Protein_701 transposase -
  LAJ19_RS03625 (LAJ19_03625) pilC 757496..758716 (-) 1221 WP_225476946.1 type II secretion system F family protein Machinery gene
  LAJ19_RS03630 (LAJ19_03630) - 758811..759449 (+) 639 WP_225476947.1 L-threonylcarbamoyladenylate synthase -
  LAJ19_RS03635 (LAJ19_03635) scpB 759446..759979 (+) 534 WP_225476948.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44469.43 Da        Isoelectric Point: 9.0798

>NTDB_id=605990 LAJ19_RS03625 WP_225476946.1 757496..758716(-) (pilC) [Deinococcus taeanensis strain TS293]
MPVFEYRVRDRSGKVLKSQMEAESAVQVRDALRSKGLMIVEIKAPKTGLSADINIPFLDNRPPSLKQVAIFSKQLATLIN
AGVPLVQSMAILQKQIEHKGFQKVVKEMRTEIESGTPLSEAIAKYPKIFNRLYLNLIRAGETSGTLDTVLERIADFQEKE
LALRGKIKSALTYPVVVLVFAILITYFLLTTIVPQFASILSQLNAPLPLITKVLMAVSDFLRHRVLILVGVCALVVFAYR
QYYATPKGRIVVDDIKLRLPILGNLTQKSAIASFARTFGLLISSGVNIIESLEITKGTANNAIVEDSIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMISIGEETGSLDDMLNKVGDFYDREVDEAVDGMTAAIEPIMIVFLGSIVGTIVAGMFLPMFSI
IGQLSQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=605990 LAJ19_RS03625 WP_225476946.1 757496..758716(-) (pilC) [Deinococcus taeanensis strain TS293]
ATGCCCGTCTTTGAATACCGCGTGCGTGACCGCTCCGGCAAGGTGCTGAAATCGCAGATGGAAGCAGAATCGGCCGTTCA
GGTTCGAGACGCACTGCGGTCCAAGGGACTCATGATCGTTGAGATCAAAGCACCCAAAACCGGCCTGAGCGCCGACATCA
ACATCCCCTTCCTGGACAACCGCCCGCCGAGCCTGAAGCAGGTCGCGATCTTCAGCAAGCAGCTCGCCACCCTGATCAAT
GCAGGGGTCCCCCTGGTTCAGTCCATGGCGATTCTGCAAAAGCAGATTGAACACAAGGGCTTTCAGAAAGTCGTCAAAGA
AATGCGAACAGAGATCGAGTCGGGAACGCCGCTCAGCGAAGCGATTGCGAAGTATCCGAAAATCTTCAACCGTCTGTACC
TGAACCTCATCCGCGCTGGAGAAACGAGCGGCACACTGGACACCGTTCTTGAGCGGATTGCCGACTTTCAGGAGAAGGAA
CTGGCACTCCGTGGGAAAATTAAGAGTGCCTTGACCTACCCCGTTGTGGTGTTGGTCTTTGCCATTCTGATTACCTATTT
CCTGCTAACCACGATTGTGCCCCAGTTTGCCAGTATTCTCTCGCAACTCAATGCGCCATTGCCGCTCATTACCAAGGTGC
TCATGGCCGTGTCAGACTTCCTACGGCACCGAGTGCTTATTCTTGTCGGAGTTTGTGCCCTAGTGGTGTTTGCTTACCGC
CAGTATTATGCTACTCCAAAAGGACGAATAGTAGTTGATGATATTAAGCTCAGATTGCCAATTCTTGGCAATCTGACCCA
AAAAAGCGCCATTGCCTCCTTCGCTCGCACTTTTGGACTTCTTATTAGCAGCGGCGTGAATATTATCGAAAGCCTTGAAA
TTACAAAAGGCACCGCCAACAACGCAATCGTTGAGGATAGCATTGAAAACGCGAAAAATGTCGTCATGGTGGGTGAGCAG
ATGAGTTCCAGTCTCGCAACGAGCAAAGTATTCCCACCGATGGTCGTCAGCATGATCAGCATTGGCGAGGAGACTGGCTC
TTTAGATGATATGCTCAACAAAGTAGGTGATTTCTATGACCGCGAAGTAGATGAAGCGGTAGATGGTATGACAGCTGCAA
TTGAACCAATAATGATCGTTTTTCTAGGGTCTATTGTCGGTACGATCGTTGCAGGTATGTTCTTACCAATGTTTAGTATC
ATTGGACAACTTAGTCAATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

57.143

100

0.571