Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NLS69_RS01895 Genome accession   NZ_CP100653
Coordinates   411444..412790 (+) Length   448 a.a.
NCBI ID   WP_250180528.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406444..417790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLS69_RS01875 (NLS69_01875) - 407281..407847 (-) 567 WP_003084491.1 hypothetical protein -
  NLS69_RS01880 (NLS69_01880) rsmD 407850..408446 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NLS69_RS01885 (NLS69_01885) - 408446..409933 (-) 1488 WP_003142627.1 pitrilysin family protein -
  NLS69_RS01890 (NLS69_01890) - 409926..411323 (-) 1398 WP_003084498.1 pitrilysin family protein -
  NLS69_RS01895 (NLS69_01895) pilA 411444..412790 (+) 1347 WP_250180528.1 signal recognition particle-docking protein FtsY Machinery gene
  NLS69_RS01900 (NLS69_01900) ftsE 412787..413458 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  NLS69_RS01905 (NLS69_01905) ftsX 413458..414465 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  NLS69_RS01910 (NLS69_01910) rpoH 414579..415433 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  NLS69_RS01915 (NLS69_01915) - 415498..416103 (+) 606 WP_003084511.1 hypothetical protein -
  NLS69_RS01920 (NLS69_01920) mtgA 416108..416839 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  NLS69_RS01925 (NLS69_01925) - 416876..417253 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  NLS69_RS01930 (NLS69_01930) thiS 417356..417556 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47678.09 Da        Isoelectric Point: 4.6083

>NTDB_id=605909 NLS69_RS01895 WP_250180528.1 411444..412790(+) (pilA) [Pseudomonas aeruginosa strain F13]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDMAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEG
MASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAR
EPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA
KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGT
AKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=605909 NLS69_RS01895 WP_250180528.1 411444..412790(+) (pilA) [Pseudomonas aeruginosa strain F13]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACATGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCTGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCA
GCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGC
ATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGA
CGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCG
CGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGC
GAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCA
ACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGTGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCG
AGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCC
AAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAA
GAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGC
AGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACC
GCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGA
CGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-223)

SRP54-type protein, GTPase domain (SRP54)

(243-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.674

95.982

0.458