Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EL389_RS02560 Genome accession   NZ_AP018808
Coordinates   541895..542500 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain E2865     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 536895..547500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL389_RS02530 (E2865_00495) rsmS 537600..537761 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EL389_RS02535 (E2865_00496) priC 537775..538302 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  EL389_RS02540 (E2865_00497) ybaN 538372..538749 (+) 378 WP_001188905.1 DUF454 family protein -
  EL389_RS02545 (E2865_00498) apt 538902..539453 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EL389_RS02550 (E2865_00499) dnaX 539582..541513 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  EL389_RS02555 (E2865_00500) ybaB 541566..541895 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EL389_RS02560 (E2865_00501) recR 541895..542500 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EL389_RS02565 (E2865_00502) htpG 542610..544484 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  EL389_RS02570 (E2865_00503) adk 544665..545309 (+) 645 WP_001220233.1 adenylate kinase -
  EL389_RS02575 (E2865_00504) hemH 545545..546507 (+) 963 WP_001250125.1 ferrochelatase -
  EL389_RS02580 (E2865_00505) aes 546504..547463 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=60587 EL389_RS02560 WP_001195025.1 541895..542500(+) (recR) [Escherichia coli strain E2865]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=60587 EL389_RS02560 WP_001195025.1 541895..542500(+) (recR) [Escherichia coli strain E2865]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment