Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K9V45_RS07065 Genome accession   NZ_CP083442
Coordinates   1547978..1548613 (-) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis strain L5734     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1542978..1553613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9V45_RS07030 (K9V45_07030) - 1543369..1543839 (-) 471 WP_016702177.1 (2Fe-2S)-binding protein -
  K9V45_RS07035 (K9V45_07035) murB 1544093..1545112 (-) 1020 WP_025804350.1 UDP-N-acetylmuramate dehydrogenase -
  K9V45_RS07040 (K9V45_07040) - 1545109..1545573 (-) 465 WP_210475030.1 low molecular weight protein-tyrosine-phosphatase -
  K9V45_RS07045 (K9V45_07045) kdsB 1545573..1546337 (-) 765 WP_124302557.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K9V45_RS07050 (K9V45_07050) - 1546334..1546519 (-) 186 WP_007931663.1 Trm112 family protein -
  K9V45_RS07055 (K9V45_07055) lpxK 1546543..1547553 (-) 1011 WP_025804352.1 tetraacyldisaccharide 4'-kinase -
  K9V45_RS07060 (K9V45_07060) - 1547553..1547981 (-) 429 WP_009047818.1 biopolymer transporter ExbD -
  K9V45_RS07065 (K9V45_07065) exbB 1547978..1548613 (-) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K9V45_RS07070 (K9V45_07070) comA 1548716..1550947 (-) 2232 WP_226304990.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K9V45_RS07075 (K9V45_07075) - 1551095..1551610 (+) 516 WP_025804355.1 DUF2062 domain-containing protein -
  K9V45_RS07080 (K9V45_07080) - 1551659..1552438 (-) 780 WP_007931651.1 ABC transporter permease -
  K9V45_RS07085 (K9V45_07085) - 1552435..1553367 (-) 933 WP_025804356.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=605850 K9V45_RS07065 WP_025804353.1 1547978..1548613(-) (exbB) [Pseudomonas chlororaphis strain L5734]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=605850 K9V45_RS07065 WP_025804353.1 1547978..1548613(-) (exbB) [Pseudomonas chlororaphis strain L5734]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTAAAGGAACTGCGCGCCCATTCTCCCTTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCCGCTGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTTGGCACTATTGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867