Detailed information NTG0605838

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: K6V71_RS23485
• Genome accession: NZ_CP083438
• Coordinates: 3099729..3102242 (+)
• Length: 837 a.a.
• NCBI ID: WP_252252802.1
• Uniprot ID: -
• Organism: Cupriavidus gilardii strain NOV2-1
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3091327..3102242	3099729..3102242	within	0

Gene organization within MGE regions

Location: 3091327..3102242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6V71_RS23455 (K6V71_23345)	-	3092756..3093502 (+)	747	WP_151023243.1	M23 family metallopeptidase	-
K6V71_RS23460 (K6V71_23350)	recJ	3093614..3095311 (-)	1698	WP_053821508.1	single-stranded-DNA-specific exonuclease RecJ	-
K6V71_RS23465 (K6V71_23355)	-	3095403..3096554 (-)	1152	WP_053823045.1	hypothetical protein	-
K6V71_RS23470 (K6V71_23360)	-	3096683..3097933 (+)	1251	WP_053821509.1	lipoprotein-releasing ABC transporter permease subunit	-
K6V71_RS23475 (K6V71_23365)	lolD	3097926..3098678 (+)	753	WP_260730458.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
K6V71_RS23480 (K6V71_23370)	-	3098706..3099548 (+)	843	WP_260730457.1	TatD family hydrolase	-
K6V71_RS23485 (K6V71_23375)	comA	3099729..3102242 (+)	2514	WP_252252802.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene

Sequence

Protein

• Length: 837 a.a.
• Molecular weight: 88991.76 Da
• Isoelectric Point: 11.6881

>NTDB_id=605838 K6V71_RS23485 WP_252252802.1 3099729..3102242(+) (comA) [Cupriavidus gilardii strain NOV2-1]
MRLTLCAFVAGCWLVQQLPALPPASIGVTAGLAALVVVIALSPLAGRPGPSSIGLHVRLLATVLAALIVGAAWSVWRAER
RLAERLAAQFEGVTLSLTGVVSGLPTGNGEGLRFAFTVDGDRPAGLPPLLSLGWQQAPPDLLPGTRLAVTARLKRPHGLA
NPHGFDYEYWLLQRGIGATGYVLAARPAAPVALRPAWRIARWRAQIRSRMLAAMPAEAPLAGVLVALAIGDQSGIAAEQW
RWFTRTGIGHLVSISGLHITMISGLAGALARALWRRSFGVGRWLRRPLPLRCPAQRAAALVAVAMALGYGLLSGMEVPAQ
RTVAMVSVAALALWWQRRPPASLVLAWAAAVALALDPWAVRAAGFWLSFGAVAAIFVAASQRTVAVTGGEPSQRSVWQAR
WQGVRRHLAESVRTQWAVTIGLLPPTLLLFQQVSVVSPLANALAIPLVSLLVTPLALCAALLAAWPVDWPAGGAIAMAAA
SLLALAHQAMAWLAAALVRLAAPDWAVWQAARPDTVELAFALLGTAVLLAPRAFGWGWRVHGLVLLIPMLSSGRAPLPAA
AFRATALDVGQGAAVLIETRGHRLLYDAGPAYGPADAPRPSAGERVVVPFLRAVGIHSLDALVISHEDADHAGGARDVMA
ALPVRRLWGSLPRGHPLWRWPPGGGPDVGQVCAAGIAWQWDGVRFELLHPLPGQGDDAAIGSNARSCVLRVSSPYAAMLL
TGDIDRAAELAMVARLPPDALRADLLLVPHHGSRTSSSDEWLDAVRPAAAVFQLGYRNRYRHPHAQVWARYGRRGIARYR
SDRTGAVEVVADRDGIAIASFRQQARRYWRPAPDAPE

Nucleotide

• Length: 2514 bp

>NTDB_id=605838 K6V71_RS23485 WP_252252802.1 3099729..3102242(+) (comA) [Cupriavidus gilardii strain NOV2-1]
ATGCGCCTGACGCTGTGCGCCTTCGTCGCGGGCTGCTGGCTGGTGCAGCAATTGCCGGCATTGCCGCCAGCGTCGATCGG
CGTGACCGCCGGTCTGGCCGCATTGGTCGTGGTGATCGCGCTGTCGCCGCTTGCCGGGCGTCCGGGGCCTTCCTCGATCG
GCCTCCATGTGCGCTTGCTGGCCACCGTGCTGGCCGCGCTGATCGTCGGCGCGGCATGGTCCGTCTGGCGTGCCGAGCGT
CGCCTGGCCGAGCGGCTTGCGGCGCAGTTCGAAGGCGTCACGCTGTCGCTGACGGGCGTGGTGTCGGGACTGCCGACGGG
CAACGGCGAGGGCCTGCGTTTCGCGTTCACGGTCGACGGCGACAGGCCGGCCGGCTTGCCGCCGCTGCTGTCGCTCGGCT
GGCAGCAGGCGCCGCCCGATCTGCTGCCCGGCACGCGGCTGGCGGTGACCGCACGGCTGAAGCGGCCACATGGTCTCGCC
AATCCGCATGGCTTCGACTACGAATACTGGCTGCTGCAGCGGGGCATTGGCGCAACCGGCTACGTGCTGGCGGCCCGCCC
CGCAGCGCCGGTGGCCCTGCGGCCGGCCTGGCGCATTGCCCGCTGGCGTGCGCAGATCCGGTCCCGCATGCTGGCGGCGA
TGCCGGCCGAGGCGCCGTTGGCGGGCGTGCTGGTGGCGCTGGCGATCGGCGACCAGAGCGGCATCGCCGCCGAGCAGTGG
CGCTGGTTCACGCGCACCGGCATCGGCCATCTGGTCAGCATCTCGGGCCTGCATATCACGATGATCTCGGGGCTGGCGGG
CGCGCTGGCACGGGCCCTGTGGCGGCGCTCGTTCGGCGTGGGCAGATGGCTGCGGCGGCCGCTGCCGTTGCGTTGTCCGG
CGCAGCGGGCGGCGGCGCTGGTCGCCGTGGCGATGGCGCTCGGCTATGGGCTGCTGTCGGGTATGGAGGTGCCGGCGCAA
CGCACGGTGGCGATGGTATCCGTGGCCGCGCTGGCGCTGTGGTGGCAGCGCCGGCCGCCGGCCTCGCTGGTGCTGGCCTG
GGCCGCCGCGGTCGCGCTGGCGCTCGACCCGTGGGCGGTGCGGGCGGCGGGCTTCTGGCTGTCGTTCGGCGCGGTCGCCG
CGATCTTCGTGGCGGCGTCGCAGCGAACCGTGGCCGTGACCGGCGGCGAGCCGTCGCAGCGTTCGGTCTGGCAGGCGCGC
TGGCAAGGCGTGCGGCGGCACCTGGCCGAGTCGGTGCGCACGCAATGGGCCGTCACGATCGGACTGCTGCCGCCGACGCT
GCTGTTGTTCCAGCAGGTGTCGGTGGTGTCGCCGCTGGCCAATGCGCTGGCGATTCCGCTCGTCAGCCTGCTGGTGACGC
CGCTGGCGTTGTGCGCGGCGCTGCTGGCCGCCTGGCCCGTGGACTGGCCGGCAGGCGGCGCCATCGCGATGGCGGCCGCA
TCGCTGCTGGCGCTGGCGCACCAGGCGATGGCATGGCTGGCGGCGGCGCTGGTGCGGCTGGCGGCGCCGGACTGGGCCGT
CTGGCAGGCGGCGCGGCCGGACACGGTCGAGCTCGCCTTCGCGCTGCTCGGCACGGCGGTGCTGCTGGCCCCGCGCGCCT
TCGGCTGGGGCTGGCGCGTGCACGGCCTGGTGCTGCTGATCCCGATGCTGTCGAGCGGCCGCGCGCCGCTGCCGGCCGCG
GCCTTCCGCGCGACGGCGCTCGATGTCGGACAGGGCGCGGCGGTGCTGATCGAGACCCGCGGCCATCGCCTGCTGTACGA
CGCCGGGCCAGCCTATGGCCCCGCCGACGCGCCACGGCCCAGCGCCGGCGAACGCGTGGTGGTGCCGTTCCTGCGCGCGG
TCGGCATCCATTCGCTCGATGCGCTGGTGATCAGCCACGAGGATGCCGATCATGCCGGCGGTGCGCGCGACGTGATGGCC
GCGCTGCCGGTCCGGCGCCTGTGGGGCTCGCTGCCGCGTGGCCATCCGCTATGGCGGTGGCCGCCCGGGGGCGGACCCGA
TGTCGGTCAGGTGTGCGCGGCCGGTATCGCGTGGCAATGGGACGGCGTGCGTTTCGAACTGCTGCATCCGTTGCCGGGGC
AGGGCGACGACGCGGCGATCGGCAGCAATGCGCGCAGCTGCGTGCTGCGGGTCTCGAGTCCTTACGCCGCGATGCTGCTG
ACCGGCGATATCGACCGCGCCGCCGAACTGGCGATGGTGGCGCGCCTGCCGCCCGATGCGCTGCGCGCCGACCTGCTGCT
GGTGCCGCACCATGGCAGCCGCACCTCGTCCAGCGACGAATGGCTCGACGCGGTAAGGCCCGCCGCGGCGGTGTTCCAGC
TCGGCTATCGCAACCGCTACCGGCATCCGCATGCGCAGGTATGGGCGCGCTATGGCCGCCGCGGGATCGCGCGCTATCGC
AGCGATCGCACCGGCGCGGTCGAAGTCGTCGCGGATCGGGACGGCATCGCGATCGCGTCGTTCCGGCAGCAGGCGCGGCG
CTACTGGCGGCCGGCGCCGGATGCGCCGGAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (227-530)

• Domain of unknown function (DUF4131) (DUF4131) (20-183)

• Metallo-beta-lactamase superfamily (Lactamase_B) (568-771)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	48.492	100	0.499