Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NLZ08_RS17945 Genome accession   NZ_CP100530
Coordinates   3626040..3626645 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain LH10-b-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3621040..3631645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ08_RS17925 (NLZ08_17925) aes 3621077..3622036 (+) 960 WP_000801849.1 acetyl esterase -
  NLZ08_RS17930 (NLZ08_17930) hemH 3622033..3622995 (-) 963 WP_001250117.1 ferrochelatase -
  NLZ08_RS17935 (NLZ08_17935) adk 3623231..3623875 (-) 645 WP_001220233.1 adenylate kinase -
  NLZ08_RS17940 (NLZ08_17940) htpG 3624056..3625930 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NLZ08_RS17945 (NLZ08_17945) recR 3626040..3626645 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NLZ08_RS17950 (NLZ08_17950) ybaB 3626645..3626974 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NLZ08_RS17955 (NLZ08_17955) dnaX 3627027..3628958 (-) 1932 WP_254547524.1 DNA polymerase III subunit gamma/tau -
  NLZ08_RS17960 (NLZ08_17960) apt 3629087..3629638 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NLZ08_RS17965 (NLZ08_17965) ybaN 3629803..3630168 (-) 366 WP_097749192.1 DUF454 family protein -
  NLZ08_RS17970 (NLZ08_17970) priC 3630238..3630765 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NLZ08_RS17975 (NLZ08_17975) rsmS 3630779..3630940 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=605801 NLZ08_RS17945 WP_001195025.1 3626040..3626645(-) (recR) [Escherichia coli strain LH10-b-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=605801 NLZ08_RS17945 WP_001195025.1 3626040..3626645(-) (recR) [Escherichia coli strain LH10-b-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCTCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443