Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NLZ09_RS08515 Genome accession   NZ_CP100525
Coordinates   1784772..1786199 (-) Length   475 a.a.
NCBI ID   WP_000980602.1    Uniprot ID   -
Organism   Escherichia coli strain LH13-b     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779772..1791199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ09_RS08485 (NLZ09_08485) yeeY 1779921..1780850 (+) 930 WP_000803353.1 LysR substrate-binding domain-containing protein -
  NLZ09_RS08490 (NLZ09_08490) yoeI 1781065..1781127 (+) 63 WP_010723108.1 membrane protein YoeI -
  NLZ09_RS08495 (NLZ09_08495) plaP 1781117..1782475 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NLZ09_RS08500 (NLZ09_08500) - 1782607..1783304 (+) 698 WP_095033700.1 IS1-like element IS1B family transposase -
  NLZ09_RS08505 (NLZ09_08505) tsuA 1783430..1784488 (+) 1059 WP_032175484.1 thiosulfate utilization transporter TsuA/YeeE -
  NLZ09_RS08510 (NLZ09_08510) tsuB 1784502..1784729 (+) 228 WP_000985279.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NLZ09_RS08515 (NLZ09_08515) sbcB 1784772..1786199 (-) 1428 WP_000980602.1 exodeoxyribonuclease I Machinery gene
  NLZ09_RS08520 (NLZ09_08520) dacD 1786408..1787574 (+) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NLZ09_RS08525 (NLZ09_08525) sbmC 1787693..1788166 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  NLZ09_RS08530 (NLZ09_08530) yeeA 1788364..1789422 (+) 1059 WP_001200905.1 FUSC family protein -
  NLZ09_RS08535 (NLZ09_08535) tmaR 1789594..1789923 (+) 330 WP_000450409.1 DUF496 family protein -
  NLZ09_RS08540 (NLZ09_08540) - 1790017..1790199 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NLZ09_RS08545 (NLZ09_08545) - 1790253..1790399 (+) 147 Protein_1675 transposase domain-containing protein -
  NLZ09_RS08550 (NLZ09_08550) - 1790688..1790768 (-) 81 Protein_1676 hypothetical protein -
  NLZ09_RS08555 (NLZ09_08555) - 1790814..1790951 (-) 138 Protein_1677 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54427.72 Da        Isoelectric Point: 5.6070

>NTDB_id=605698 NLZ09_RS08515 WP_000980602.1 1784772..1786199(-) (sbcB) [Escherichia coli strain LH13-b]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=605698 NLZ09_RS08515 WP_000980602.1 1784772..1786199(-) (sbcB) [Escherichia coli strain LH13-b]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACACATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581