Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K7G90_RS04165 Genome accession   NZ_CP083396
Coordinates   908824..911241 (-) Length   805 a.a.
NCBI ID   WP_224046333.1    Uniprot ID   -
Organism   Pasteurella canis strain HL1500     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903824..916241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G90_RS04145 (K7G90_000830) kdsB 905050..905829 (-) 780 WP_224046331.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K7G90_RS04150 (K7G90_000831) - 905831..906013 (-) 183 WP_049213986.1 Trm112 family protein -
  K7G90_RS04155 (K7G90_000832) lpxK 906040..907005 (-) 966 WP_224046332.1 tetraacyldisaccharide 4'-kinase -
  K7G90_RS04160 (K7G90_000833) msbA 907033..908781 (-) 1749 WP_115322554.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K7G90_RS04165 (K7G90_000834) rec2 908824..911241 (-) 2418 WP_224046333.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7G90_RS04170 (K7G90_000835) dksA 911537..911974 (+) 438 WP_049213982.1 RNA polymerase-binding protein DksA -
  K7G90_RS04175 (K7G90_000836) pcnB 912063..913565 (+) 1503 WP_223668314.1 polynucleotide adenylyltransferase PcnB -
  K7G90_RS04180 (K7G90_000837) folK 913586..914071 (+) 486 WP_049213980.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K7G90_RS04185 (K7G90_000838) - 914121..915206 (-) 1086 WP_115322550.1 homoserine O-acetyltransferase -
  K7G90_RS04190 (K7G90_000839) - 915356..916069 (+) 714 WP_223668316.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 92163.45 Da        Isoelectric Point: 9.8799

>NTDB_id=605625 K7G90_RS04165 WP_224046333.1 908824..911241(-) (rec2) [Pasteurella canis strain HL1500]
MRLSIEQMSACILFSAVSLLWLPDFLLLTWQMTAVACLILLILLFVCYVSGKRQCTRFLILILCLLFNLGYMHAPAHQLL
SQADKVILLPKKVKIDFKIIEILHQTDYQTFIVSAQLQKGETEQRIYLQWRTKEKVQLGEVWHGELSLKPISSRLNFSGF
DKQQWYLANRITARASVKSAVKLTQHFSWRNQLLKESLKQTEGLDYQGLLIALAFGERAWLPQQIWQIYQKTNTAHLIAI
SGLHIGLAMSIGYWIVRCVQILLPLRWIIPHLPMLSGLLLAYIYGQLAGFAIPTSRACIALFVIISCRLLRVSYNAWQLL
LIVTAILLLFDPLMILSLSFWLSISAVTCLVLWYQVFPFSLLQWQGKSISISPWHKVEWIIRIFHLQIGLLWLFTPIQLL
LFNGFSLSSFYANLIALPIYSLVLVPLVLFATFTQGAFSSWPIANEIAQKVTLILQTWQDNWHFVSQTETAFIITALTVL
FIIAVRSVYDVKKVDKTRRNLYCLNKPYFGFHFTAEPTLFCSLKRSIYCIATLIVTSCLGYPIYQSFFASQWRLDMLDVG
QGLAVLITKNGRGILYDTGSAWRSGSMAQLEIVPYLQRQGISLEHVIISHDDNDHAGGTKTILQQYPKTTLTTASRQNYG
KTDRTFCLSGQKWYWQGLNIIVLSPHHIVTRAKNMDSCVLLISDGYNNVLLTGDADVASENQFVSQLDKIDVLQVGHHGS
KTSTGYALLQKTRPKIALISSGRWNQWKFPHKQVIQRLTQYQCQIYNTAETGQISLLFNKKQITIQRARTEFSPWYRRLI
GLQKK

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=605625 K7G90_RS04165 WP_224046333.1 908824..911241(-) (rec2) [Pasteurella canis strain HL1500]
ATGCGATTATCTATTGAACAAATGTCAGCTTGTATTTTATTCAGCGCAGTTTCACTACTTTGGTTACCTGATTTTTTATT
GCTCACTTGGCAGATGACAGCAGTCGCTTGTCTGATATTACTTATATTATTATTTGTTTGTTATGTTAGTGGAAAAAGAC
AATGTACAAGATTTCTCATTTTGATACTTTGTCTTCTATTTAATCTAGGTTACATGCATGCTCCTGCCCATCAGTTATTA
TCTCAAGCTGATAAAGTCATTTTATTACCCAAAAAAGTAAAAATAGATTTTAAAATTATAGAGATACTTCATCAAACTGA
TTACCAAACCTTTATTGTGTCAGCGCAGTTACAAAAAGGAGAGACCGAACAACGTATTTATCTGCAATGGCGCACGAAAG
AAAAAGTTCAGTTGGGCGAAGTATGGCATGGAGAATTGTCCTTGAAACCTATTTCTTCACGGTTAAATTTTTCAGGTTTT
GATAAACAGCAATGGTATTTAGCCAACCGAATTACTGCACGAGCATCAGTAAAAAGTGCGGTTAAACTTACCCAACATTT
TTCATGGCGTAATCAATTACTTAAAGAGAGTTTAAAACAAACAGAAGGATTAGATTATCAAGGGCTCTTAATAGCGTTAG
CTTTTGGTGAGAGAGCGTGGTTACCACAACAAATATGGCAAATTTATCAAAAAACGAATACAGCACATCTTATAGCTATT
TCTGGATTACATATTGGATTAGCAATGAGTATAGGTTATTGGATAGTACGATGTGTTCAAATTTTATTACCATTACGCTG
GATTATCCCTCATTTACCGATGTTAAGCGGTTTACTATTAGCCTATATTTATGGACAGCTAGCGGGGTTTGCAATACCAA
CCTCTCGTGCTTGTATAGCACTATTTGTGATTATAAGTTGTCGACTACTACGTGTTTCTTACAACGCTTGGCAACTTTTA
TTGATCGTCACGGCTATATTGCTGTTGTTCGATCCATTAATGATTTTATCGTTGAGTTTTTGGCTATCAATAAGCGCGGT
AACGTGTTTAGTCCTCTGGTATCAGGTTTTTCCTTTTTCTTTATTACAATGGCAAGGAAAATCCATATCTATCAGCCCTT
GGCATAAAGTAGAGTGGATTATTCGTATCTTTCACCTACAAATTGGCTTACTATGGCTTTTTACACCGATCCAATTACTT
TTGTTTAATGGTTTTTCTTTAAGTAGCTTTTATGCGAATTTAATAGCGTTACCCATTTATAGTCTCGTATTAGTGCCTCT
TGTTTTGTTTGCGACTTTTACACAAGGTGCGTTCTCATCATGGCCTATCGCAAATGAGATAGCCCAAAAAGTGACGTTAA
TTTTGCAAACTTGGCAAGATAATTGGCATTTTGTTTCTCAAACAGAAACCGCATTCATTATTACTGCACTGACAGTACTT
TTTATCATAGCAGTTCGCTCTGTATACGATGTCAAAAAAGTAGATAAAACAAGGAGAAATCTATATTGTCTCAATAAACC
TTATTTTGGCTTCCATTTTACAGCTGAACCAACATTATTTTGTTCTTTAAAACGCTCAATTTATTGCATTGCAACTTTAA
TTGTGACTAGTTGTTTGGGTTATCCGATTTATCAATCTTTTTTTGCATCTCAATGGCGTTTGGATATGTTAGATGTGGGG
CAAGGATTAGCTGTCTTAATAACAAAAAATGGGCGAGGTATCTTATATGATACAGGAAGCGCATGGCGTAGTGGTAGTAT
GGCGCAGCTTGAGATTGTGCCATATTTACAACGACAAGGTATAAGTCTAGAACACGTAATTATTAGCCATGATGACAATG
ATCATGCAGGAGGAACAAAAACAATCTTACAACAATATCCAAAGACCACACTGACGACGGCATCAAGGCAAAATTATGGC
AAAACAGACCGCACTTTTTGTCTTTCAGGGCAAAAATGGTATTGGCAAGGATTAAACATCATAGTGCTTTCACCTCATCA
TATTGTAACGCGTGCAAAGAATATGGACTCTTGTGTATTATTGATTTCTGATGGATACAATAACGTATTATTAACGGGGG
ATGCTGATGTTGCAAGTGAAAATCAATTTGTCTCTCAACTAGATAAAATTGATGTCTTACAAGTCGGACATCATGGGAGT
AAAACCTCGACAGGCTATGCACTATTACAAAAAACGCGGCCTAAAATCGCACTTATTTCAAGTGGACGTTGGAATCAGTG
GAAGTTTCCTCATAAACAAGTGATACAGCGTTTAACGCAGTATCAATGTCAAATTTACAATACGGCTGAGACAGGACAAA
TCAGTTTATTGTTTAATAAAAAACAAATTACAATTCAAAGAGCAAGAACAGAATTTTCACCTTGGTACCGTAGATTAATT
GGCTTACAAAAAAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-483)

Metallo-beta-lactamase superfamily (Lactamase_B)

(558-741)

Domain of unknown function (DUF4131) (DUF4131)

(29-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

50.767

97.143

0.493