Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HK81_RS08995 Genome accession   NC_021848
Coordinates   212824..213342 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 207824..218342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS08985 (M636_09260) gshA 210559..212127 (+) 1569 WP_005462538.1 glutamate--cysteine ligase -
  HK81_RS08990 (M636_09265) - 212152..212757 (+) 606 WP_015297256.1 hypothetical protein -
  HK81_RS08995 (M636_09270) luxS 212824..213342 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  HK81_RS09000 (M636_09275) - 213404..214684 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  HK81_RS09005 (M636_09280) - 214810..215604 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  HK81_RS09010 (M636_09285) ffh 215817..217199 (+) 1383 WP_005462555.1 signal recognition particle protein -
  HK81_RS09015 (M636_09290) rpsP 217409..217657 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  HK81_RS09020 (M636_09295) rimM 217686..218234 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=60561 HK81_RS08995 WP_005462534.1 212824..213342(+) (luxS) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=60561 HK81_RS08995 WP_005462534.1 212824..213342(+) (luxS) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment