Detailed information NTG0605608

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: LAE74_RS06225
• Genome accession: NZ_CP083395
• Coordinates: 1172417..1173376 (-)
• Length: 319 a.a.
• NCBI ID: WP_032685565.1
• Uniprot ID: -
• Organism: Campylobacter coli strain C203018
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1167417..1178376

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAE74_RS06195 (LAE74_06155)	-	1168382..1168582 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
LAE74_RS06200 (LAE74_06160)	-	1168612..1168911 (-)	300	WP_002777238.1	cytochrome c	-
LAE74_RS06205 (LAE74_06165)	-	1168988..1169551 (+)	564	WP_002820231.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
LAE74_RS06210 (LAE74_06170)	rfaD	1169548..1170501 (+)	954	WP_038853884.1	ADP-glyceromanno-heptose 6-epimerase	-
LAE74_RS06215 (LAE74_06175)	rfaE1	1170494..1171879 (+)	1386	WP_002831599.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
LAE74_RS06220 (LAE74_06180)	gmhA	1171876..1172436 (+)	561	WP_052783332.1	D-sedoheptulose 7-phosphate isomerase	-
LAE74_RS06225 (LAE74_06185)	waaF	1172417..1173376 (-)	960	WP_032685565.1	lipopolysaccharide heptosyltransferase II	Regulator
LAE74_RS06230 (LAE74_06190)	-	1173435..1174253 (+)	819	WP_002780620.1	glycosyltransferase family 2 protein	-
LAE74_RS06235 (LAE74_06195)	-	1174349..1175380 (+)	1032	WP_224027311.1	polysaccharide pyruvyl transferase family protein	-
LAE74_RS06240 (LAE74_06200)	-	1175866..1176210 (+)	345	WP_002780624.1	hypothetical protein	-
LAE74_RS09085 (LAE74_06205)	-	1176220..1176408 (+)	189	WP_032682936.1	sulfatase-like hydrolase/transferase	-
LAE74_RS06245 (LAE74_06210)	-	1176413..1177189 (+)	777	WP_050456352.1	sulfatase-like hydrolase/transferase	-
LAE74_RS06250 (LAE74_06215)	-	1177286..1177558 (+)	273	WP_002780626.1	hypothetical protein	-
LAE74_RS09090	-	1177744..1177875 (+)	132	WP_004283885.1	hypothetical protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36723.20 Da
• Isoelectric Point: 10.3041

>NTDB_id=605608 LAE74_RS06225 WP_032685565.1 1172417..1173376(-) (waaF) [Campylobacter coli strain C203018]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKTIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=605608 LAE74_RS06225 WP_032685565.1 1172417..1173376(-) (waaF) [Campylobacter coli strain C203018]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAACCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.357	100	0.944