Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K9M52_RS14120 Genome accession   NZ_CP083387
Coordinates   3635452..3636849 (+) Length   465 a.a.
NCBI ID   WP_224069079.1    Uniprot ID   -
Organism   Arachidicoccus terrestris strain 5GH13-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3630452..3641849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9M52_RS14100 (K9M52_14110) - 3631133..3631642 (-) 510 WP_224069075.1 phosphoribosyltransferase family protein -
  K9M52_RS14105 (K9M52_14115) - 3631792..3633120 (+) 1329 WP_224069076.1 (Fe-S)-binding protein -
  K9M52_RS14110 (K9M52_14120) - 3633145..3634050 (+) 906 WP_224069077.1 MBL fold metallo-hydrolase -
  K9M52_RS14115 (K9M52_14125) - 3634072..3635079 (+) 1008 WP_224069078.1 N-acetylmuramoyl-L-alanine amidase -
  K9M52_RS14120 (K9M52_14130) radA 3635452..3636849 (+) 1398 WP_224069079.1 DNA repair protein RadA Machinery gene
  K9M52_RS14125 (K9M52_14135) - 3636915..3638378 (+) 1464 WP_224069080.1 MFS transporter -
  K9M52_RS14130 (K9M52_14140) - 3638451..3639428 (+) 978 WP_224069081.1 ROK family protein -
  K9M52_RS14135 (K9M52_14145) - 3639578..3641830 (+) 2253 WP_224069082.1 GH92 family glycosyl hydrolase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51648.23 Da        Isoelectric Point: 5.8798

>NTDB_id=605533 K9M52_RS14120 WP_224069079.1 3635452..3636849(+) (radA) [Arachidicoccus terrestris strain 5GH13-10]
MAKIKKAFFCNNCGYESPKWLGKCPSCGSWNTFVEEVIQTGSRQSPNSWSDYQIADDNTGTRRDTRIVTLDQIETQKEVR
ILTSDAEINRVLGGGIVPGSIVLVAGEPGIGKSTLFLQAGLELQNYRVLYISGEESEQQIKMRAARIAVHSDQFYLLTET
LTQEIFKEIRKLRPQLIIVDSIQTLQSNIIESSPGTVSQIRECAAEFQRFAKETNTPVFLIGHITKDGNIAGPKILEHMV
DTVLQFEGDRHYAYRILRTLKNRFGSTAELGIYEMTASGMRAVNNPSEILITQKTEQLSGSAIAASMEGMRPLLLEVQAL
VTQSVYGTPQRTVSGFDLRRLQLLLAVLEKRGGFLFGMKDVFINIAGGLKVEDPSIDLAVISALLSSYEDKPLPPTICFA
GEVGLNGEIRAVNRVEQRVAEAEKLGFEQIIVSKYNKKGFADQARNIQVVALGKVEELYDLLFRE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=605533 K9M52_RS14120 WP_224069079.1 3635452..3636849(+) (radA) [Arachidicoccus terrestris strain 5GH13-10]
ATGGCGAAAATAAAAAAAGCCTTTTTTTGTAATAATTGCGGCTATGAAAGCCCGAAATGGTTGGGTAAATGCCCCAGTTG
TGGCAGTTGGAACACATTTGTAGAAGAAGTGATTCAGACAGGCAGCCGTCAGTCGCCTAATAGCTGGTCAGATTATCAGA
TAGCCGACGATAATACGGGCACCCGAAGGGATACCCGTATTGTGACACTGGATCAGATCGAGACCCAAAAGGAAGTTCGG
ATTCTGACCAGTGATGCGGAGATTAACCGGGTTCTGGGCGGCGGAATTGTCCCGGGATCCATCGTGCTTGTGGCCGGAGA
ACCGGGAATTGGTAAGAGTACGCTGTTTTTACAAGCCGGACTTGAATTACAAAACTATCGTGTATTATATATCAGCGGGG
AAGAAAGTGAACAACAGATTAAAATGCGTGCAGCGCGAATCGCCGTACACAGTGATCAGTTTTATTTACTCACTGAAACG
CTTACACAGGAGATCTTTAAAGAGATCCGCAAATTAAGGCCTCAGCTGATTATTGTGGATTCGATTCAGACATTGCAATC
TAACATTATCGAATCGTCTCCGGGTACAGTATCACAAATCCGGGAATGTGCTGCCGAGTTTCAGCGCTTCGCAAAAGAAA
CGAATACGCCTGTTTTTTTAATTGGCCATATCACCAAGGATGGCAATATCGCTGGTCCAAAAATCCTGGAGCACATGGTC
GATACGGTACTACAGTTTGAAGGCGACCGCCATTACGCTTACCGGATACTCAGAACCCTGAAAAATCGCTTTGGCAGCAC
AGCTGAACTAGGTATCTATGAAATGACCGCCAGTGGCATGCGTGCTGTTAATAACCCTTCAGAAATTCTGATCACACAAA
AGACAGAACAGTTGAGTGGCAGCGCTATTGCGGCCAGTATGGAGGGGATGCGACCTTTGCTGCTGGAAGTACAGGCCCTT
GTCACGCAAAGTGTTTATGGAACACCACAAAGAACTGTCAGTGGGTTCGACCTTCGACGATTACAGTTGCTGTTGGCTGT
TTTAGAGAAAAGGGGCGGTTTTCTGTTCGGGATGAAAGATGTTTTTATTAATATCGCCGGCGGATTAAAAGTAGAAGACC
CTTCTATCGATCTGGCCGTGATCTCAGCCTTGCTCTCTTCATACGAAGATAAGCCGTTACCACCCACTATTTGTTTTGCC
GGTGAAGTAGGGTTGAACGGAGAGATCAGAGCGGTAAACAGGGTCGAACAAAGAGTAGCCGAAGCAGAGAAACTGGGTTT
TGAACAGATCATTGTCTCAAAATATAATAAAAAGGGATTTGCCGATCAGGCTAGAAACATACAGGTGGTGGCACTTGGTA
AAGTAGAAGAGCTCTATGATCTTCTATTTAGAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-228)

Subunit ChlI of Mg-chelatase (ChlI)

(350-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.707

99.785

0.486
  radA Streptococcus mitis NCTC 12261

48.707

99.785

0.486
  radA Streptococcus pneumoniae Rx1

48.707

99.785

0.486
  radA Streptococcus mitis SK321

48.707

99.785

0.486
  radA Streptococcus pneumoniae R6

48.707

99.785

0.486
  radA Streptococcus pneumoniae TIGR4

48.707

99.785

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

99.14

0.482