Detailed information NTG0605519

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: LAE73_RS05075
• Genome accession: NZ_CP083379
• Coordinates: 960696..961655 (-)
• Length: 319 a.a.
• NCBI ID: WP_032685565.1
• Uniprot ID: -
• Organism: Campylobacter coli strain C203115
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 955696..966655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAE73_RS05045 (LAE73_05010)	-	956661..956861 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
LAE73_RS05050 (LAE73_05015)	-	956891..957190 (-)	300	WP_002777238.1	cytochrome c	-
LAE73_RS05055 (LAE73_05020)	-	957267..957830 (+)	564	WP_002820231.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
LAE73_RS05060 (LAE73_05025)	rfaD	957827..958780 (+)	954	WP_038853884.1	ADP-glyceromanno-heptose 6-epimerase	-
LAE73_RS05065 (LAE73_05030)	rfaE1	958773..960158 (+)	1386	WP_002831599.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
LAE73_RS05070 (LAE73_05035)	gmhA	960155..960715 (+)	561	WP_052783332.1	D-sedoheptulose 7-phosphate isomerase	-
LAE73_RS05075 (LAE73_05040)	waaF	960696..961655 (-)	960	WP_032685565.1	lipopolysaccharide heptosyltransferase II	Regulator
LAE73_RS05080 (LAE73_05045)	-	961714..962532 (+)	819	WP_002780620.1	glycosyltransferase family 2 protein	-
LAE73_RS05085 (LAE73_05050)	-	962628..963659 (+)	1032	WP_224027311.1	polysaccharide pyruvyl transferase family protein	-
LAE73_RS05090 (LAE73_05055)	-	964145..964489 (+)	345	WP_002780624.1	hypothetical protein	-
LAE73_RS09105 (LAE73_05060)	-	964499..964687 (+)	189	WP_032682936.1	sulfatase-like hydrolase/transferase	-
LAE73_RS05095 (LAE73_05065)	-	964692..965468 (+)	777	WP_050456352.1	sulfatase-like hydrolase/transferase	-
LAE73_RS05100 (LAE73_05070)	-	965565..965837 (+)	273	WP_002780626.1	hypothetical protein	-
LAE73_RS09110	-	966023..966154 (+)	132	WP_004283885.1	hypothetical protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36723.20 Da
• Isoelectric Point: 10.3041

>NTDB_id=605519 LAE73_RS05075 WP_032685565.1 960696..961655(-) (waaF) [Campylobacter coli strain C203115]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKTIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=605519 LAE73_RS05075 WP_032685565.1 960696..961655(-) (waaF) [Campylobacter coli strain C203115]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAACCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.357	100	0.944